| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CCV52592_0396 |
|---|
| Symbol | nspC |
|---|
| ID | 5405918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter curvus 525.92 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009715 |
|---|
| Strand | - |
|---|
| Start bp | 1659836 |
|---|
| End bp | 1660978 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640873117 |
|---|
| Product | carboxynorspermidine decarboxylase |
|---|
| Protein accession | YP_001408907 |
|---|
| Protein GI | 154174242 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01047] carboxynorspermidine decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000394285 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAAA TTTTAAACGA CATCAAAACC CCGGCTTACG TTTGCGAGGA GGCGAAACTT
CGCGCAAATT TAGAGCTTTT AAAGCACGTC AAAGACGAGA GCGGGGCTAA AATTTTAGTC
GCCCTCAAGG GCTTTGCGCT AAGCGGCGTG ATGGATATGA TCAGCCGTTA TCTCGACGGA
GCGACGGCTA GCGGGCTATA CGAGGCGAAA TTTGCAAAGG ATTTCATAAA AGGCGAGATA
CACACCTATT CGCCGGCGTT TAAGGACGAG GAGATAGATG AAATTTTAAG CCTTTCAAAG
CACATAGTCT TCAACTCACT AAATCAATGG CGTAAATTTA AAGACAAAGC CCTTGCTAGC
GGCATTTCGT GTGGACTTCG CATAAATCCC GAAAGCTCGG CCTCGCCGAC AGACGCGTAT
AATCCTTGCG CGAGATTTAG TCGTCTTGGC ATCACGAGGG CGAATTTAGA CAAATTCGAT
AGTCTTGATG GTATCGAGGG GCTACATTTT CACGCACTTT GCGAGGAGAG TGCGGAGAGT
CTGGAGACCG TGCTGATGAG CTTTGAGGAG AAATTCGGCT CTGAAATTTC AAAGATGAAA
TGGATAAATT TTGGCGGCGG ACATCACATC ACAAGGGCCG ATTATAACGT GCAGCTTTTG
ATAAATTTGA TCAAAAATTT CCGCGATAGA TACGGCGTAG AGGTTTATTT GGAGCCTGGC
GAAGCGGTAG GCTGGCAGAC CGGATTTTTG ATAGCTAGTG TGCTTGACAT CGTGGAAAAC
GAGAAAAATA TCGCGATCCT TGACACCTCG GCCGAAGCGC ATATGCCAGA TACGATCTTG
ATGCCCTATC GTCCGGCGGT GCGCGGCGAA AGCAGGAGCG GTAAATTTAG CTACCGATTT
GGCGGAAACA CCTGCCTAGC CGGCGATATC GTAGGGCAAG ATGCCGGAAA TGCAGACTAT
AAATTTAACG AGCCTCTAAA GATCGGCGAC AAGGTCATCT TTGAGGATCA GATACACTAC
ACGATCGTAA AAAACACGAC TTTTAACGGT ATAAAACTGC CTGACCTGCT ACTTTTGAAG
GAAAACGGCG AGATCGAAAT TTTAAGAAAA TTTGGCTACG ACGAATACAA GAGGCGAAAT
TAG
|
|---|
| Protein sequence | MNEILNDIKT PAYVCEEAKL RANLELLKHV KDESGAKILV ALKGFALSGV MDMISRYLDG
ATASGLYEAK FAKDFIKGEI HTYSPAFKDE EIDEILSLSK HIVFNSLNQW RKFKDKALAS
GISCGLRINP ESSASPTDAY NPCARFSRLG ITRANLDKFD SLDGIEGLHF HALCEESAES
LETVLMSFEE KFGSEISKMK WINFGGGHHI TRADYNVQLL INLIKNFRDR YGVEVYLEPG
EAVGWQTGFL IASVLDIVEN EKNIAILDTS AEAHMPDTIL MPYRPAVRGE SRSGKFSYRF
GGNTCLAGDI VGQDAGNADY KFNEPLKIGD KVIFEDQIHY TIVKNTTFNG IKLPDLLLLK
ENGEIEILRK FGYDEYKRRN
|
|---|
| |