Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CCV52592_0106 |
Symbol | |
ID | 5406932 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter curvus 525.92 |
Kingdom | Bacteria |
Replicon accession | NC_009715 |
Strand | - |
Start bp | 791198 |
End bp | 793042 |
Gene Length | 1845 bp |
Protein Length | 614 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640872242 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | YP_001408074 |
Protein GI | 154173683 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00530506 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGCCG CAAAAGAAGC TTTGAGCCAA ATAGAGGAGC TTTTCACTGA AAATGCAAAA GGTTTTCTCA CCTATGAAAA ACTCGTAAAA TTATTAGACA AAGCGCCTAC GGCGACGATG ATAAAAAAGA TAGAGCAGCT TGCTAAAACA CATAAAGTCC AGCTGATGAC AGCTGCCGAG ATCGCAAAGA TGAGAAATAT CGCCGATGCG AAAAAGCGCC TTGAAAATAC ACAAAAAACA GATGTGAATA TCGAAGAAGA CCTCGATCTG ACAAGTGACA ACGACTTTTT AGAGTGGTCG CGCTCGGATA GTCCGGTGAG GATGTATCTA AGAGAAATGG GGCAAATTTC ACTGCTTACA AAAGACGAAG AGGTCGAGAT CAGTAAAAAG ATCGAGCTTG GCGAAGATAT CATTATAGAC GCCTTTTGCT CGGTGCCGTT TTTGATAGAT TTCATACTTG ACTACAAAGA GCCGCTCATC AACAGAGAGC GCCGCGTCAA AGAGCTTTTT AAAAGCTTTG AAGACGAGAG CGAGAGCGAA GACGAGGACA TCGAGAACGA CGAGGACGAA GAGAACGAAG ACGAGGAAGC GCCCAAAAAA TCGCTCAAAA ACGATAAACG CGCAGAAAAG GTCATCGAAA GCTTCAAAGC TCTTGAAAAA GCAAAAAAAG AGTGGCTAAA AACCGTAAAT AAGCAAGAAA AGGTCGAAGT AGAGGACACT ATGTCAAAGC TCACCCTTGC TTTTAAAAAG AAAATTTTAA AAGACAAGCT GATGGATCTA GGGCCGACCA GTAAGCTCAT AAGCGAGATC GTAAAGTCCA TGGAGACCGC TCTAAAAAGT GATGATGAGT TTGACCGCGA GCTAAAGCGC CTGGAGTATC GCTTGCCGAT GTTTAGCGAT GAGCTCAAGA AAAATCACAA AAGCATACTA AAAGACATCA TCAAACTAAA CAAGGAGGAG ATCGCAGCTC GCGTGCCTGA GGCGACGATG GTTTCTACTT ATGTCGAGAT CAAAAAGCTC TTTACAACAA AAGAAGCGAG CAAGCAAGGC TTTGACCTGG AGCCCGCACG CTTAAAGGAA ATTTTAGAGC AAATCAAGCG CGGCAAGAAA ATATCAGACG AAGCCAAAGC TCGTATGGCA AAGTCGAATT TGCGCCTTGT AGTATCTATC GCCAAGCGCT ATACGAACCG CGGTTTACCG TTTTTGGACC TCATACAAGA GGGCAATATC GGTCTCATGA AAGCCGTCGA TAAATTCGAA TACCGCAAAG GATATAAATT TTCCACCTAT GCCACATGGT GGATACGCCA AGCTATCAGT CGCGCTATAG CCGATCAAGC TCGCACTATC CGCATACCGA TACACATGAT AGAGACGATA AACCGTATCA ATAAAATCAA CCGCAAATAT CTGCAAGAAG AGGGCAAAGA GCCTGATGTG AGCGTTATCG CAAAAGAGGT CGGACTAAGT GTCGATAAAG TAAAGCAAGT CATAAAAATA ACGAAAGAGC CTATCAGTCT AGAAGCCCCT ATCGCAAACG AAGAGGATGG AAAATTTGGC GATTTTGTAG AGGATAAAAG CTCGCTTTCA CCGATAGAGC AGATTTTAAA AGGCGATCTA AGAGAGCAGA TAGATGATGT CTTGTCACAG CTAAATGACC GTGAAAAGGC CGTCATCTGC ATGAGATTTG GACTGCTTGA AGACGAGAGC GATCGCACTC TTGAAGAGAT AGGCAAAGCT CTAAACGTGA CTCGCGAGCG TGTCCGGCAG ATAGAAAGCT CCGCTATCAA AAAGCTAAAA CACCCGAAAG TAGGCAGAAA GCTCAAAAAC TATATCGAGG GGTAA
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Protein sequence | MSAAKEALSQ IEELFTENAK GFLTYEKLVK LLDKAPTATM IKKIEQLAKT HKVQLMTAAE IAKMRNIADA KKRLENTQKT DVNIEEDLDL TSDNDFLEWS RSDSPVRMYL REMGQISLLT KDEEVEISKK IELGEDIIID AFCSVPFLID FILDYKEPLI NRERRVKELF KSFEDESESE DEDIENDEDE ENEDEEAPKK SLKNDKRAEK VIESFKALEK AKKEWLKTVN KQEKVEVEDT MSKLTLAFKK KILKDKLMDL GPTSKLISEI VKSMETALKS DDEFDRELKR LEYRLPMFSD ELKKNHKSIL KDIIKLNKEE IAARVPEATM VSTYVEIKKL FTTKEASKQG FDLEPARLKE ILEQIKRGKK ISDEAKARMA KSNLRLVVSI AKRYTNRGLP FLDLIQEGNI GLMKAVDKFE YRKGYKFSTY ATWWIRQAIS RAIADQARTI RIPIHMIETI NRINKINRKY LQEEGKEPDV SVIAKEVGLS VDKVKQVIKI TKEPISLEAP IANEEDGKFG DFVEDKSSLS PIEQILKGDL REQIDDVLSQ LNDREKAVIC MRFGLLEDES DRTLEEIGKA LNVTRERVRQ IESSAIKKLK HPKVGRKLKN YIEG
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