Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHAB381_1537 |
Symbol | |
ID | 5408312 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter hominis ATCC BAA-381 |
Kingdom | Bacteria |
Replicon accession | NC_009714 |
Strand | - |
Start bp | 1473666 |
End bp | 1475366 |
Gene Length | 1701 bp |
Protein Length | 566 aa |
Translation table | 11 |
GC content | 28% |
IMG OID | 640871208 |
Product | putative hemolysin activation protein HecB |
Protein accession | YP_001407069 |
Protein GI | 154148959 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2831] Hemolysin activation/secretion protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.395998 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGTTTAT TTATTATTTT TATTTTATCT GTAATTACCA TTTTTGCAAA TACACTGGAT GATATTTCTC AAACTCAAGC CAAGCAGGAA GAAGATAGAT TAAAGTTTAT AGAAAGCCAA AAAGAGAGTT CAAATATTAT TTTAACTCCC AAACAAAATC AAATTTCAGC CATTATCCCA AATGAAAATC CTTGCTTTGA AATTGATGAA GTGTTACTGA TCGGCAATGA AAGCGATAAA TTTAAAAAAT ATCTTAGAAA AGCTCTGAAA GAAGTAGGCT TTAAATACAG AACCTGTATA GGGCAAGAGA GTATAAATAT TATTTATAAC GCTTTTTATA ATGAAATTTT AAAAGCCGGA TTTATTACGA CTTACGTAAA TTTACCTTCT CAAAATTTAA AAAGTAAAAC TCTAAAATTT GAAATAATAC CAGGAAAAAT AGACACTATT AATATAAATG ATAAAAATTC CACTAAAAAT AAAATTTCAT TATTCGGTGC ATTCGGCGGA GATAAAAAAG ATAAAAATTT AAATTTAAGA GATATCGAAC AAGCTCTTGA AACCATTCAA AACGCTTCTT TAGGTAAAGT TTCCGTAGAA ATTTTACCGT CTAAAAAAGA AAATTATAGC AATATAAATA TTTCAAAAGA TGAAAAAAGT CCGTTAAGCT TTTCTTTATC ATTTGATAAT TTAGGAAGTA AAGAAACAGG AAAATATCAG GGCGGACTTA ATATTAATGC TTTAAATTTA CTTGGTTTTA ATGAAATTTT TTACTCATCT TTTTCAAAAA ATATATTTAA AACCGATGAA CAAAATATCA ACGATGAAAG CCGAAGAGGA GGAAGCGATA ATATTTATTA CGGACTTTCG GTTCCGTTTG ACAGATTTTT ACTTGATTTT AACGAATACG GATATAATTA CGATCAAGCA ATCCTTGGAG CTTTTGGAGT TTATAAATAT AGCGGAAAAA GTAAAAGAAG AAATTTAACT TTAAATTATT TATATTATAG AGATCAAATT TCAAAAAATA GTTTATTTTT TAGACTTTGG GAAAAAGAGA ATAAAAACTA TATAGAAGAT TATGAATTAG ACAATCAAAG AAAAAAAACT GCAGGTTATG AAGCAGGACT AAACTCACAA TTTTTTATAG AAAACGGCTT TTTATCTTTA GGATTATCAT ACAAAAAAGC AACTGGTGCA AGAGGGTCTT TACAGGCTCC TGAAGAAGAA TACAATGAAG GAACAAATAG ATTTGAAACT ATAAGTTCCG ATATTCGTTT TAGAAAAAGT GGAACAAATA TACCGCTTAC TTATGATCTC AATATTCATT CAATGTGGAA TAAAACTCCT CTAACCTTGC AGGAAAGATT AAATATCGGC GGATACTACA GCGTAAGAGG ATTTGACGGT AAAATGAGCC TGGTAGGAGA TAGAGGGTAT TATATAAGAA ATACTTTGGA ATACGGCATA TTTAATAATC ATTTTATTTA TGCAGCTTTT GACTTTGGCA AGGTAGGCGG AAAAAGTTCA AATTATATGA CTGATAATAC TTTAATCGGC TCAGGTATCG GTTTAAAAGG AAATTTTAAC AAATACGGCT CACTCTCTTA TGATGCTTTG CTTGGATTTC CTATAAAAAA ACCTGAATTT TATGAAAGCA ATGATGCCGT TTTAAATTTT TCTATAAATT ATAATTTTTA A
|
Protein sequence | MRLFIIFILS VITIFANTLD DISQTQAKQE EDRLKFIESQ KESSNIILTP KQNQISAIIP NENPCFEIDE VLLIGNESDK FKKYLRKALK EVGFKYRTCI GQESINIIYN AFYNEILKAG FITTYVNLPS QNLKSKTLKF EIIPGKIDTI NINDKNSTKN KISLFGAFGG DKKDKNLNLR DIEQALETIQ NASLGKVSVE ILPSKKENYS NINISKDEKS PLSFSLSFDN LGSKETGKYQ GGLNINALNL LGFNEIFYSS FSKNIFKTDE QNINDESRRG GSDNIYYGLS VPFDRFLLDF NEYGYNYDQA ILGAFGVYKY SGKSKRRNLT LNYLYYRDQI SKNSLFFRLW EKENKNYIED YELDNQRKKT AGYEAGLNSQ FFIENGFLSL GLSYKKATGA RGSLQAPEEE YNEGTNRFET ISSDIRFRKS GTNIPLTYDL NIHSMWNKTP LTLQERLNIG GYYSVRGFDG KMSLVGDRGY YIRNTLEYGI FNNHFIYAAF DFGKVGGKSS NYMTDNTLIG SGIGLKGNFN KYGSLSYDAL LGFPIKKPEF YESNDAVLNF SINYNF
|
| |