Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHAB381_1277 |
Symbol | mnmC |
ID | 5409230 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter hominis ATCC BAA-381 |
Kingdom | Bacteria |
Replicon accession | NC_009714 |
Strand | - |
Start bp | 1213690 |
End bp | 1215693 |
Gene Length | 2004 bp |
Protein Length | 667 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 640870956 |
Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
Protein accession | YP_001406828 |
Protein GI | 154148694 |
COG category | [E] Amino acid transport and metabolism [S] Function unknown |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) [COG4121] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0226023 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTTA TAAACGGTAT TTTATTTAAC GAAAATTTTA AAGATTTTTA CTCAAATTTC AAAAATCCTT TCGGCGAGAG CGAATTTGTG TTCGGCTCAG CTGTAAATGA AATTTTAAAA ACTCAAAATC GTGTAATTGT AGCAGAACTT GGCTTCGGTC TTGGTCGAAA TTTTTTAAAT ATAGCCGCTA AATTTAAAAA TAGCGATAAA ATTTTGCACT TTGTTTCTAT AGAAAAATTT CCTTTACAAA AGGAAATTTT GGCTAAATTT TATGAGAATT TCAAGTTTGA AGGTGCAAAA AAACTTTTAA AACTTTATCC TACACTTGAA AGCGGTTTTC ACCGTATAAA ATTCAGTAAA AATATCACGC TTGATCTGCT TTTCGGAGAT GCCGAATGTG TATTGAAAGA GTGTGAGTTT AAAGCTGATA TTTGGCTTAT GGATGGATTT TCGCCAAGTA AAAATCCTGA TATGTGGAGC GATGAAATTA CTTCCCAAAT AGCCAGACTT TGCAGGATTA AAGCAAAAAT TGCAACATAC AGCGCTTCAA AAAAAGTGCA AAAAAGTTTG GAAAATGCAG GTTTTTGTGT AGTTAAAACG CCGGGATTTA ATGGTAAGCG CGAAATGATA AGAGCTTATT TCAATGGAAA TTCAGGCGAG ATCAAAGATT ATTTTTTCGA AAGGCCAAGT TTTAAAAGCG GCAAAAATGT GCTGATAATA GGAGCAGGAA TCGCAGGAAT CGTTACTGCA ATTAAATTTC AAAATCTTGG ATATAAAACT GTAATTGCAG AAAAAGCGTG CAGTGTCGCT GCTAATGCAA GCGGAAATTT TTGTGGAGTT TTGGAACCCC TTATTACTAA AAAAGGCGTG AAACTAGGCG AAATGCATAA ATATGCTTTC AAAATGGCGG TCAAATTTTA CAAAAAGAAT GTACCGAAAA ATCTTGCAAA ATTTTGTGGT GCAAAAGAGT TTGCTTATAA TGATGACATT TTAAAGCGTT TTGAAACTCA TGATAAAAGT GAAATTTTCG ATTTTAATCG AAAAGATCTG CCTTACGCTT CTATTTTTAT AAAAAATGCC GCGCTTTTAA GACCGCGAAA AATTTGCGAA TTTTTTAGTA AAAAACTTAA TATAAAATTT GGTTATGAGT TTAGTGATTT TGTTGAATCA AATGGCGGTT ATATTGTAAA TTTTGTCGGT AAAAAGCCTT TAAAATGCGA TATTTTGATA TTTGCGATGG GGAGCGAAAG TGAAGAACTT TTTGGCGGCG GGAAAAATGT GCGTGCAAAT TTCGATGATG CGATGCAAAT AAGCTCCGTT CGCGGTCAAA TTACACTTTT GCGCCCATTT TTAAAGACGC CCATTCCTCT TGGCGCACGC GGATATATTT GTCCTAAGAT CGGCAAACGC CAGTTAATCG GGGCTACTTA TGACAGAAAA GATTATGAAA ATCAAGCCAG AACTTTCGAT GATGAAAGAA ATTTGCAAAA CGTGGCTGAG CTTTTAAATA AAAATTTTGT TAAAAATACA GATACCAGAA ATTTAAATGA TAAAAAATTT AAATTTGAAA TTTTGGATAA AAATGTTGAT TTCAATGTTT CAAAACAGAA TTTAAATTTT AAAATGCACA CGCAAAATAA AGAGCTTGCT TTTAAAAATC AAATTTTAAA TGTTAAAATT TTGGGTTCTC GTGTCGGATT TCGAGGATAT AGCGGTGATA GATTTCCGTT AATCGGTGCT TTGCCGGACT GCGAATATTT CAAAGAAAAA TATAAAATTT TACCGTGGCA AAAAAATCGT GCTAAAAATT TGCCACCAAA ATATTTAAAA AATATCTATA TAAATACATC TCATGGCGCT AGAGGTCTTT GCACGGCGAT TTTGGGAGCT GAAATTTTAG CCGATTTGGT CACAAATCGT CCGTTTTGTT TACCAAAAAG TCTTATCAAT GAGCTGGCAC CAAGCCGTTT TTTGATAAGA AAACTTAAAA AAGGACTGAA ATAA
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Protein sequence | MKFINGILFN ENFKDFYSNF KNPFGESEFV FGSAVNEILK TQNRVIVAEL GFGLGRNFLN IAAKFKNSDK ILHFVSIEKF PLQKEILAKF YENFKFEGAK KLLKLYPTLE SGFHRIKFSK NITLDLLFGD AECVLKECEF KADIWLMDGF SPSKNPDMWS DEITSQIARL CRIKAKIATY SASKKVQKSL ENAGFCVVKT PGFNGKREMI RAYFNGNSGE IKDYFFERPS FKSGKNVLII GAGIAGIVTA IKFQNLGYKT VIAEKACSVA ANASGNFCGV LEPLITKKGV KLGEMHKYAF KMAVKFYKKN VPKNLAKFCG AKEFAYNDDI LKRFETHDKS EIFDFNRKDL PYASIFIKNA ALLRPRKICE FFSKKLNIKF GYEFSDFVES NGGYIVNFVG KKPLKCDILI FAMGSESEEL FGGGKNVRAN FDDAMQISSV RGQITLLRPF LKTPIPLGAR GYICPKIGKR QLIGATYDRK DYENQARTFD DERNLQNVAE LLNKNFVKNT DTRNLNDKKF KFEILDKNVD FNVSKQNLNF KMHTQNKELA FKNQILNVKI LGSRVGFRGY SGDRFPLIGA LPDCEYFKEK YKILPWQKNR AKNLPPKYLK NIYINTSHGA RGLCTAILGA EILADLVTNR PFCLPKSLIN ELAPSRFLIR KLKKGLK
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