Gene CHAB381_1056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHAB381_1056 
Symbol 
ID5408901 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCampylobacter hominis ATCC BAA-381 
KingdomBacteria 
Replicon accessionNC_009714 
Strand
Start bp992807 
End bp994432 
Gene Length1626 bp 
Protein Length541 aa 
Translation table11 
GC content32% 
IMG OID640870741 
Producttype II and III secretion system protein 
Protein accessionYP_001406614 
Protein GI154147986 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[N] Cell motility 
COG ID[COG1450] Type II secretory pathway, component PulD 
TIGRFAM ID[TIGR02519] pilus (MSHA type) biogenesis protein MshL 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0036675 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCATTAT TACATATAAG TAAAAAAATT GGCATAGCTA CATTATTGGC TGTTAGCGTT 
GCTACAAGCT TAAATGCTGC TAGTTCTAGT TGCGACAAAA GAGCTTTTAA TATAAAAGTA
AATGATGTCG TCACGCTAAA TGAAATGCTT ACACAACTTT CCGATGTGTG TAAATTTTCA
GTTGTGGCAA AAGATGCTGT TGCTGCAGAG GAATTAAAAA AAGAACTTCA AGGTGTAGGT
ATAAAAGACC TTTCATTGAG AGAAATTTTT GATTTATTAA TTAGCGAGAA TAATCTTAGT
TATGATTTTT CGAACAATGT TTTGAAAATT TCCGCTTTGC AAACTAAAAC CTTTAAAGTT
GATTATATTA CGTCTGTTAG AGAAGCCACA GCGGTAACTA AAGCTTCTGT TGATTCAGAT
CCTATAGAAA TGGGCAATGA AGGTAATAGC GAATCTAAAC AGGACAATCT TATTTCAGCA
AAAGAGAAAT TTGATTTTTG GGAAAAAATT AGCGATGAAG TTACCTCTAT CTTAAATAAC
GGTACAGAAA AATATGTCGC TATCGCGCCT ATCATAAATC AAAATGCAGG TTTGGTAACT
GTAACCGGTA TGAAATCTCA AATCGCAAGA GTTGATGCAT ATATAAATAA AATGAAAAAA
CGTCTTGAAA GACAAGTAAG TCTTGATGTT TCTATTGTAG CAGTCGAACT TAGCAATAGT
TACACAACCG GAATTGATTG GAGTAAATTT CAATTAGGCT TTAATACATA TCTTAATGGA
GATCCGTCAA CTCCTACTTC ATATAGTTTT GGAAATAGAA ATAAAGTTGG TCAAGTTACA
TCTTTGCCTC AAATTGAAGA CATTAAGGAT AAAGATGGAA AGATTCTTTT TAGTAGACCA
ACATCGCTTG GAACATGGGA TTATAAAGAA AAAAGTATGG GTAGTGTAAA AGCCAGCGAT
AGCAATGGTG TGTGGGCAAT TGGAGCAAAT CTTAACTTTA ATATAGACGG AATGATAAAT
TTTCTTGAAA CAAAAGGCAA AACTAAAATT ATTTCAAGTC CAAAAGTTAC AACTATGAAT
AATCAACCGG CTATTATTTC AGTTGGTGAT GTTATAAATT ATCGTATTCA AGAAAATACT
ACAAGTGGCG GTCAAACAGA TGCTGGAACT ACTTCTGTAA CATATACCAA TTATTCTACA
TTTATAGGAA TTTTATTAAA TATATTGCCT GAAATTTCGG ATGATAATAG AATTATGCTA
AGAGTAAATC CATCTTTGAG CGATTTTAAA TATCAAGCCG ATAGAGAAGC TACAGCTCAA
CTTGATAGAG TTATGGCGCC TGATACAATT CAAAAGAAAA TTTCAAGTGT TGTATGGGTA
GATGATGGTG ATACTGTTAT ACTTGGCGGT TTGATCGGTC AAAATAAAGG AAAAGATAAT
AAAAATGTTC CATTCTTAAG CGATATACCT TTGATAGGTA ATCTTTTCAA AAGTACTGCC
GATAGACTTA CTACAACTGA ATTGGTGTTT GTTATTACTC CTCGTATCAT AGATAACACT
GATACAAAAG TCAGTGATTC TTTGAAAGAG CTTGGTTTTT CTAAATCTTT ATATACAAAT
GAGTAA
 
Protein sequence
MSLLHISKKI GIATLLAVSV ATSLNAASSS CDKRAFNIKV NDVVTLNEML TQLSDVCKFS 
VVAKDAVAAE ELKKELQGVG IKDLSLREIF DLLISENNLS YDFSNNVLKI SALQTKTFKV
DYITSVREAT AVTKASVDSD PIEMGNEGNS ESKQDNLISA KEKFDFWEKI SDEVTSILNN
GTEKYVAIAP IINQNAGLVT VTGMKSQIAR VDAYINKMKK RLERQVSLDV SIVAVELSNS
YTTGIDWSKF QLGFNTYLNG DPSTPTSYSF GNRNKVGQVT SLPQIEDIKD KDGKILFSRP
TSLGTWDYKE KSMGSVKASD SNGVWAIGAN LNFNIDGMIN FLETKGKTKI ISSPKVTTMN
NQPAIISVGD VINYRIQENT TSGGQTDAGT TSVTYTNYST FIGILLNILP EISDDNRIML
RVNPSLSDFK YQADREATAQ LDRVMAPDTI QKKISSVVWV DDGDTVILGG LIGQNKGKDN
KNVPFLSDIP LIGNLFKSTA DRLTTTELVF VITPRIIDNT DTKVSDSLKE LGFSKSLYTN
E