Gene CHAB381_1017 details

Gene Information

• Locus tag: CHAB381_1017
• Symbol: ligA
• ID: 5409537
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter hominis ATCC BAA-381
• Kingdom: Bacteria
• Replicon accession: NC_009714
• Strand: -
• Start bp: 955238
• End bp: 957175
• Gene Length: 1938 bp
• Protein Length: 645 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 640870704
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_001406577
• Protein GI: 154148661
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.682519
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGAAG CCGAATATCT AAAAGCGGTG GAAATGCTCA ATATATGGGC AAAAGCTTAT 
TATACGCAAG ATAATCCTTT AGCTACGGAC ATCGAATATG ACGTGCTTTA TAAAAAAGTC 
GAAACTTTTG AAAATGAGTT TCCTGATTTA AAAGTTTCCT ATTCGCCTAC TAATCGCGTG 
GGAGATGCCG TAAGCGAAGG TTTTGAAAAG ATAAATCACA AAGCGAAAAT GTGGTCTATG 
GAGGATATTT TTGATGATAA CGAGCTTTTG GCTTGGCTTG AACGCGGCGA AAAAGCAGGT 
TTGGAATTTT TCGTTGAGCC GAAATTTGAC GGAGCAAGTT TAAATTTAAC TTATGAAAAC 
GGCGTTTTAA TTTCGGCAGG AACGCGCGGA AATGGTGAAA CAGGCGAAAA TGTAACGCAA 
AATGTGAAAG TTATTAACTC TATTCCTTTG CAAATCGATT ATAAAGAAAA AATTGAAATC 
AGAGGCGAAG TCGTAATCGC TAAAAGTGAC TTTGACGCAC TTAATGATGA GCGTGCAAAC 
AGCGGTGAAA ATCTTTTTGC AAATCCTAGA AATGCGGCAG CCGGAAGTCT TCGCCAACTT 
GACAGCGCCG TGGTAAAATC GCGCCATTTA AAATTTTTTC CTTGGGATGT CGGAGAAAAT 
TCTCTAAATT TTAAAAAACA CAGTGAAATT ATGGAGTTTG TGCGAAATTT AGGCTTTTTA 
AAAGATGATT TTGTAAGAGT TTGCGCTTCT TTAACGGATT TAAGAAAAGC CTATGTGGAT 
TTACACGAAA TGCGAGAACG TAAAGATATT TTAATGGATG GAATGGTAAT TCGTATAAAT 
GAACTTACAA AATGTGAAAA TATGGGTTAT ACAATTAAAT TTCCACGCTT TATGGTCGCG 
TATAAATTTC CGCCTGTCGA AAAAGCGACT AAACTTATCG ATATAAATTT ACAAGTCGGC 
CGCACAGGTG TAATCACGCC CGTAGGAGTT TTGGAGCCTG TAAATATAGA TGGCGCAACA 
GTGCGAAACG CCACACTTCA CAATTTCGAT GAAATCGCGC GTCTTGGGCT TATGAAAGGC 
GATATCGTAA GTATAATACG AAGCGGCGAT GTAATTCCTA AAATCACAGG CGTTTTCGGT 
GCGCGCAGAA ATGGAAGTGA AACGCCGATA AAAAGACCGG AGTTTTGTCC TGTTTGCGGA 
AGCAGACTTT TGGTGGAAGA TATTTTTATA AGATGTCAAA ATCTCACTTG CAAAGCGCGT 
ATTGTAAATT CGCTGATATA TTTTTGCTCT AAAAAATGTA TGAATATAGA CGGTCTTGGC 
GAAGCTATCA TAAATACACT TTTTGAAAAA GGTAAAATTA TAAATATATC GGACATTTAC 
ACATTGAAAG CTGATGATTT GGAAGGACTT GAAGGATTTA AAGACAAAAA AATTTCAAAT 
CTTTTAGCAT CTATTGAAAA TAGTAGGATT TCACCACTTT ATAGGTTTAT TACAGCACTT 
GGAATCGAAC ATATAGGCGA AGTGGCCGCC AGAAAAATCG CTGAAATTTT TGGCGAAAAT 
TGGCTGAATG CAAGTTTTGA TGAAATTTTA AAAATCGACG GATTCGGTGA AGCGATGGCG 
AAAAGTTTTG TCGGTTTTTG TGAGATAAAT CGCGAAAAAA TTGAAAATTT ACTTTCTTTT 
TTGCATTTAA GCGCCCAAAA AACTGAAATT TCACAAAATG TTTTCACAAA AAAAACTGTT 
GTAATTACAG GAACTCTCAG CATTTCGCGC GACGAGATGA AAGAAAAACT CATCAAAATG 
GGTGCAAATG TAACAAACTC CGTTTCTAAA AAAACGGATT TCGTGCTTTT TGGAAAAGAT 
GCCGGAAGTA AGCTTGAAAA AGCAAAAATG CTTGGCGTAA AAGCGATAAG CGAAGATGAG 
TTTAAGGAAA TGCTTTGA 

 

Protein sequence

MSEAEYLKAV EMLNIWAKAY YTQDNPLATD IEYDVLYKKV ETFENEFPDL KVSYSPTNRV 
GDAVSEGFEK INHKAKMWSM EDIFDDNELL AWLERGEKAG LEFFVEPKFD GASLNLTYEN 
GVLISAGTRG NGETGENVTQ NVKVINSIPL QIDYKEKIEI RGEVVIAKSD FDALNDERAN 
SGENLFANPR NAAAGSLRQL DSAVVKSRHL KFFPWDVGEN SLNFKKHSEI MEFVRNLGFL 
KDDFVRVCAS LTDLRKAYVD LHEMRERKDI LMDGMVIRIN ELTKCENMGY TIKFPRFMVA 
YKFPPVEKAT KLIDINLQVG RTGVITPVGV LEPVNIDGAT VRNATLHNFD EIARLGLMKG 
DIVSIIRSGD VIPKITGVFG ARRNGSETPI KRPEFCPVCG SRLLVEDIFI RCQNLTCKAR 
IVNSLIYFCS KKCMNIDGLG EAIINTLFEK GKIINISDIY TLKADDLEGL EGFKDKKISN 
LLASIENSRI SPLYRFITAL GIEHIGEVAA RKIAEIFGEN WLNASFDEIL KIDGFGEAMA 
KSFVGFCEIN REKIENLLSF LHLSAQKTEI SQNVFTKKTV VITGTLSISR DEMKEKLIKM 
GANVTNSVSK KTDFVLFGKD AGSKLEKAKM LGVKAISEDE FKEML