| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_2431 |
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| Symbol | dapF |
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| ID | 5410695 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Methanoregula boonei 6A8 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009712 |
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| Strand | - |
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| Start bp | 2509938 |
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| End bp | 2510765 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640869688 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001405588 |
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| Protein GI | 154151970 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.410157 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAATAC CCTTTGTCAA ACTGCACGGG AACGGCAACG ATTTCGTTCT TATCGACGAA
TATGCGCAGA TGATTATTCC CGATGACCTG AAAGGGCAGT TTGCTGCCCT GTACTGCGAA
CGGCGCTTCG GGATTGGTGC GGACGGCATA CTGTTCCTCG CAAAACCGAC CAGAAAGGCC
GATATAAGGA TGCGGATCCT CCAGCCTGAT GAGAGCGAGG CCGAAATGTG CGGGAACGGA
ATCCGCTGCC TTGCCAAGTA CGCGTACGAC ATGGGCTACA TTCAGGAAAC CTGTACGGTC
CAGACCGAGG CCGGGGATCT GGAAGTGAGC GTGCGGTACG AGGGTGAGGA ATGTACCGTG
ACCATCGGGA TGGGTGAGCC GAAATTCAAA CGTAAGGACA TTCCTGCCAC CGGGAAAGGC
GAGTACCACG AACAGATCGG GGGTTTTGAG GTTCATGCAG TCAACACCGG TGTCCCCCAT
GCGGTGATTC TCACCGACGA TCTGGGCAGC ATCGACCTTG CAGCCGTTGC CCCACAGATC
CGGAACCATC CGACTTTCCC TCATGGTGCA AACGTGAACT TTGTTCAGAA GACCGGGGAG
GATTCGATCC GGGTGCGCAC CTTCGAACGC GGGGTGGAGG ACGAGACGCT CTCCTGTGGG
ACCGGGGCAA CCGCGTCTGC TGCGGTCGTG CACCATCTCG GATATATGAA CGGGCCTGTC
CAGGTCGAGA CCAAAGGTGG TCCCCTGACG ATCCATTTCG ATCCCGAGGG TAAGGCAAGG
ATGGAAGGGC CTGCGGTCGC CGTCTTTTCC GGTCTGATCC TCTACTAA
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| Protein sequence | MEIPFVKLHG NGNDFVLIDE YAQMIIPDDL KGQFAALYCE RRFGIGADGI LFLAKPTRKA
DIRMRILQPD ESEAEMCGNG IRCLAKYAYD MGYIQETCTV QTEAGDLEVS VRYEGEECTV
TIGMGEPKFK RKDIPATGKG EYHEQIGGFE VHAVNTGVPH AVILTDDLGS IDLAAVAPQI
RNHPTFPHGA NVNFVQKTGE DSIRVRTFER GVEDETLSCG TGATASAAVV HHLGYMNGPV
QVETKGGPLT IHFDPEGKAR MEGPAVAVFS GLILY
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