| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_2166 |
|---|
| Symbol | |
|---|
| ID | 5411277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 2238812 |
|---|
| End bp | 2239909 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640869412 |
|---|
| Product | L-tyrosine decarboxylase |
|---|
| Protein accession | YP_001405323 |
|---|
| Protein GI | 154151705 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.511307 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAGTA ACGGGATATC AGAAGACGAT CTCTTCTCTT TTTTATCCTT ACACAAGAAG
GAAGACCTCG ACCACCGGTA CATCTTAAGC TCCATGTGTA CGCTCCCGCA TCCGGTCGCG
GTCCGGGCGC ACTGCATGTT CATGGAGACC AATCTTGGAG ACCCCGGACT TTTCCCCGGC
ACTGCGGCAC TGGAACGTCT GCTTGTCGAG CGTCTGGGCA CCCTCTTCCA TCACAAGAAC
GCCGGCGGCT ATGCAACTTC GGGAGGTACC GAGTCCAATA TCCAGGCGCT CAGGCTTGCA
AAGGCACTCC GTCCCGGTTC CAGTCCGAAC GTGGTTCTTC CCGAATCTGT CCATTTCTCC
TTTAAGAAGG CCTGCGATCT CCTCAGTCTG GAAATGCGCA GCGTACCGCT CGGCACAGAC
AGGAGGATCA TGGCAGATAA GGCTGCCGAA CTGATTGACA AAAACACTAT CTGTCTCGTG
GGTGTTGCCG GCACCACAGA GTACGGCATG GTGGATCCGA TCGCAGATCT TGCAAAGATC
GCTGCCCAGC AGGACATCTT CCTGCACGTG GATGCGGCGT TTGGCGGGAT GGTGATCCCA
TTTCTTCCCA AGCCAGTTCC CTTTGATTTT GCTCTTCCCG GGGTTACTAC TCTTGCAGTG
GACCCGCACA AGATGGGTAT GAGCACGATC CCGGCGGGGG TTCTCCTCAC CCGGGAGCCG
GACATGCTTG ATGCGCTCAA TATCGACACC CCGTACCTCA CGGTAAAAAA AGGATATACG
CTTGGCGGTA CCCGCCCGGG CGCCCCGATG GCCGGGGCTC TTGCAGTCCT TGATTACCTT
GGCATTTCTG GAATGAAGGC TGTGGTTGCC GGCTGCATGA AGAATACAGA GCGCTTAATC
GCCGGTATGG AGACACGGGG AATACAGCCG GCCGCCAGTC CCGATGTAAA TGTTGCAACC
TTTGTCTGCG ACCGGGTACC AGAACCGTGG AAAGTCTCAT GGACTCGGGC CGGCCACCTC
AGGATTGTCT GCATGCCGCA TGTAACTGCA GACCGTATCG AAGCGTTCCT TTCAGATTTT
GGTGATATGT ATGCTTGA
|
|---|
| Protein sequence | MLSNGISEDD LFSFLSLHKK EDLDHRYILS SMCTLPHPVA VRAHCMFMET NLGDPGLFPG
TAALERLLVE RLGTLFHHKN AGGYATSGGT ESNIQALRLA KALRPGSSPN VVLPESVHFS
FKKACDLLSL EMRSVPLGTD RRIMADKAAE LIDKNTICLV GVAGTTEYGM VDPIADLAKI
AAQQDIFLHV DAAFGGMVIP FLPKPVPFDF ALPGVTTLAV DPHKMGMSTI PAGVLLTREP
DMLDALNIDT PYLTVKKGYT LGGTRPGAPM AGALAVLDYL GISGMKAVVA GCMKNTERLI
AGMETRGIQP AASPDVNVAT FVCDRVPEPW KVSWTRAGHL RIVCMPHVTA DRIEAFLSDF
GDMYA
|
|---|
| |