Gene Mboo_1955 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMboo_1955 
Symbol 
ID5409992 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Methanoregula boonei 6A8 
KingdomArchaea 
Replicon accessionNC_009712 
Strand
Start bp2019213 
End bp2020337 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content57% 
IMG OID640869196 
Productputative DNA primase, small subunit 
Protein accessionYP_001405113 
Protein GI154151495 
COG category[L] Replication, recombination and repair 
COG ID[COG1467] Eukaryotic-type DNA primase, catalytic (small) subunit 
TIGRFAM ID[TIGR00335] DNA primase, eukaryotic-type, small subunit, putative 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.804448 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCCGG CGACAACGGA GTTTGTGCGG CAGCGTTTTG CGGAGTACTA TCGCAAGGCC 
ATGCTAGTTT CGCCCTCATC TCTTGCCCAG CGTGAATGGG GTTTTGTCCT TTTTAACCCG
GGGGCCGCCG AGCTGCGGAT GCGCCGACAT ATCGCATTCC CTGAACGTAC GGAGCTTTTT
GATTACATCA GGAACCTTGT CCCCTCTCAT GTGTATTACT CGAGCGCGTA CTATGAGAAA
CCGGATGCGC CTACCATGGC CGAGAAAGGC TGGTGTGGGG CCGACCTGAT CTTCGATCTC
GATGCGGATC ATATTGTCAA GGGGCCCTAC GACCAGATGC TCTCCCGGGT CAAAACCGAA
ACCGAGAAAC TGCTTGCCAT GCTCACTGAA GAGCTGGGGA TCGATTCAAA ACAGATTGAG
CTGGTCTTTT CCGGTGGGAG GGGCTACCAC GTGCACGTGC GGGATCTTGC CTTCCGCGGG
TGGGGGAGTG CTGAGCGGCG GGAACTGGTT GACTACATCT GCGGTATCGG GATAGATCCC
GCCGTGCTGC TGAACGGGGG CCTGGTGCCC GGGTGGCCAG CCCGGTTCCG CAGCGCGCTG
GCGGAATATA TCGGATGGCT CGGAACGCTC AGCGAAGATG GGGCGATGGC ACATCTGACT
TCGCTTGAAG GCGTGGGAAA AGAATCAGCA GCCGGGTTTT TGAAAAAACG TGCAGAGATC
CTTGCCGGGC TCAGCGGGGA AATCGATCCC ACTCTTCTCA AAGACCGGGT AATAAAAGCA
GTTGTGCACG AAACTGAAGG GGAGTTTCGG AAACGGCTCA ACGAGAAAGC CGCGCTTGCA
GATGAACCGG TCACAACGGA CATCAAGCGC CTGATCCGGA TGCCAACATC CATCCATGGC
GGCAGCGGGA TGCGGGTCCA GCCACTTGAA CTACGGGATC TGCCTGACTT TGATCCCCTT
GTGGATGCAG TGGTCTTTTC TGCCCGCGAG GTCCGCGTGG ACGCTCGCTT CCCGCTTGCC
ATGCCTATGC TGGGAAGCAC TTATCAGATC CAAAAAGGGA TCTCTACAGT ACCCGAAGCC
GTGGGCGTCT TCCTCTGCTG CCGCGGCATT GCGGAAATTG CATAA
 
Protein sequence
MNPATTEFVR QRFAEYYRKA MLVSPSSLAQ REWGFVLFNP GAAELRMRRH IAFPERTELF 
DYIRNLVPSH VYYSSAYYEK PDAPTMAEKG WCGADLIFDL DADHIVKGPY DQMLSRVKTE
TEKLLAMLTE ELGIDSKQIE LVFSGGRGYH VHVRDLAFRG WGSAERRELV DYICGIGIDP
AVLLNGGLVP GWPARFRSAL AEYIGWLGTL SEDGAMAHLT SLEGVGKESA AGFLKKRAEI
LAGLSGEIDP TLLKDRVIKA VVHETEGEFR KRLNEKAALA DEPVTTDIKR LIRMPTSIHG
GSGMRVQPLE LRDLPDFDPL VDAVVFSARE VRVDARFPLA MPMLGSTYQI QKGISTVPEA
VGVFLCCRGI AEIA