Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mboo_1933 |
Symbol | |
ID | 5411018 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Methanoregula boonei 6A8 |
Kingdom | Archaea |
Replicon accession | NC_009712 |
Strand | - |
Start bp | 1998409 |
End bp | 2000223 |
Gene Length | 1815 bp |
Protein Length | 604 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640869172 |
Product | DNA-directed RNA polymerase subunit B' |
Protein accession | YP_001405091 |
Protein GI | 154151473 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR03670] DNA-directed RNA polymerase subunit B |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAAT CACGCGTATT TGTTGATGGT GCCTTAATCG GCCTTGTCGA TGACCCAAAG GGCCTTGTGG AGAATATCCG TTCCATGCGC CGGCAGGGCG CCATATCCTC CGAGGTCAAT GTCTCGTTCA AGGAATTCAA CGGCGATGTG ATCCTTCTCA CCGACCGCGG CCGCGCCCGC CGACCCCTGA TCGTATTAAA GGACGGCAAG AGCCTGATCT CTGAAGACGA TATTAAGAAA CTTGCCAAGC GTGAGATCGA TTTCTCCTCA TTCGTACAGC GGGGCCTCAT CGAGTTCGTG GATGCCGAGG AAGAAGAAGA TCTCCTCATT GCCATGAATC CCGCCGATAT TACGCCGGCG CACACCCACC TGGAGATTGA CCCCTCGCTT ATCCTTGGGA TCGGTGCGGC GCATGTCCCG TTCCCGGAGC ACAATGCAAG TCCGCGTGTC ACAATGGGAG CAGGGATGGT CAAGCAGGCG CTGGGGTTTG CCGCGGCAAA CATGAAGCTC CGGCCGGATA CCCGTGGCCA CATGCTTCAC TATGTGCAGA AACCGCTCAC CCACACCCAG ACCTCCGAAT TGATTGGATC AGACGACCGG CCTGCCGGGC AGAACTTTGT GGTTGCCATC CTCTCGTACG AAGGTTACAA CATTGAAGAT GCGCTTATCT TCAACAAGGC CTCGATTGAC CGTGGCCTGG GCCGTTCGCA CTTCTTCAGG ACCTATGAAG GTGAAGAACG CCGGTACCCC GGTGGCCAGA TTGACCGCAT CGAAGTCCCA GATGAAGATG TGAGCGGTGC CCACGGTGCC GAATCCTATA AGAATCTGGA TGAGGATGGC GTGATCAATC CCGAAACGAT CGTTGCCGAA AAGGATGTCC TGATCGGTAA GACTTCGCCG CCCCGGTTCC TTGAAGAGCC CTCCGGAGAA CTTATCGCGG TGGAGAAGCG CCGCGACACC TCGGTCACGA TGCGCAGCAA CGAGCACGGC ATCGTGGACA CGGTTATTAT CACTGAGGGT GAGAACAGTT CACGCCTCGT GAAGGTGCGG ACCCGTGACC TCCGTGTCCC AGAGATCGGC GACAAGTTTG CATCCCGACA CGGACAGAAA GGGGTTATCG GGCTTATTGT CAACCAGGAA GACATGCCCT TTACCGAAAG TGGTCTCTCT CCCGATCTCG TGATCAATCC CCATGCAATC CCGAGTCGTA TGACCATCGG GCACATGCTC GAGATGATCG GTGGTAAGGT CGGGTCACTC GAAGGCCGAA GAATCAATGC CACCGCATTT GGAGGCGAGA GCGAGGCTGA CCTCCGTGCC TCTCTCAGAA AACTCGGCTA CTCTCATACC GGCCGAGAAG TGATGTATGA CGGGTATACC GGAAAATCTT TTAAGGCCGA TATCTACATC GGCGTAATTT ACTACCAGAA GTTGTACCAC ATGGTCAGCT CCAAGATGCA CGCCCGGTCC CGCGGGCCGG TGCAGGTGCT TACCCGGCAG CCCACCGAGG GCCGTGCCCG TGAAGGAGGT CTCCGGTTCG GTGAGATGGA GCGTGATGTC ATGATCGGCC ACGGTGCCGC TATGGCATTA AAGGAGCGTC TGCTTGACGA ATCAGACAAG GTGCAGGAGT ATGTCTGTGC CCACTGTGGA ATGGTGGCAA TGCTTGACCG CAAGCGCAAC ATGACCCGCT GCCTGGCCTG CGGCAACGAG ACTGACATTT ACCCGGTCGA GATGAGCTAC GCATTCAAGC TCCTGCTGGA TGAGATGAAG AGCATGGGAA TAGCACCCCG CCTGAGATTA GAGGATGTAG TATAA
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Protein sequence | MKKSRVFVDG ALIGLVDDPK GLVENIRSMR RQGAISSEVN VSFKEFNGDV ILLTDRGRAR RPLIVLKDGK SLISEDDIKK LAKREIDFSS FVQRGLIEFV DAEEEEDLLI AMNPADITPA HTHLEIDPSL ILGIGAAHVP FPEHNASPRV TMGAGMVKQA LGFAAANMKL RPDTRGHMLH YVQKPLTHTQ TSELIGSDDR PAGQNFVVAI LSYEGYNIED ALIFNKASID RGLGRSHFFR TYEGEERRYP GGQIDRIEVP DEDVSGAHGA ESYKNLDEDG VINPETIVAE KDVLIGKTSP PRFLEEPSGE LIAVEKRRDT SVTMRSNEHG IVDTVIITEG ENSSRLVKVR TRDLRVPEIG DKFASRHGQK GVIGLIVNQE DMPFTESGLS PDLVINPHAI PSRMTIGHML EMIGGKVGSL EGRRINATAF GGESEADLRA SLRKLGYSHT GREVMYDGYT GKSFKADIYI GVIYYQKLYH MVSSKMHARS RGPVQVLTRQ PTEGRAREGG LRFGEMERDV MIGHGAAMAL KERLLDESDK VQEYVCAHCG MVAMLDRKRN MTRCLACGNE TDIYPVEMSY AFKLLLDEMK SMGIAPRLRL EDVV
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