| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1206 |
|---|
| Symbol | |
|---|
| ID | 5411354 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 1222512 |
|---|
| End bp | 1223054 |
|---|
| Gene Length | 543 bp |
|---|
| Protein Length | 180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640868433 |
|---|
| Product | GrpE protein |
|---|
| Protein accession | YP_001404367 |
|---|
| Protein GI | 154150749 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0576] Molecular chaperone GrpE (heat shock protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.390676 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.00686163 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGATC ACGATACCAC CCCTGTGCCG GAGACCCCGG CCGCAGAGCC GGAGACATCG
GTACCCTCTC CGCCCGGGCA GAACGATGAA CTTGCCGGGC AGAAGAAGCG GTACGCAGAG
CTCAATGACC GGTACCTCAG GCTTGCAGCG GACTTCGACA ATTACCGGAA GCGGATCGCA
CGGGACCATG AAACCCAGGT TCAGCTGGCA AACGAACGGT TTGCCGTTGA TATCCTGGAG
ATTGCAGACA ATCTGGACCG TGCACTCAAA GCCGATGAGG ATCATCTCCG CACAGGTGTT
GACCAGATCC GCCAGCTGCT TGCCGGAGTG CTTGCACGAC ATGGTATCAC ACCCATAGAT
GCACAAAAAA TTTCATTTGA TCCCGGGGTC CACGAGGCTG TCGCACATAT TCCTTCCGAT
GAGAAGGAAG GAACGGTCAT CGACGTGGTT TCTCCGGGGT ACCGGATGCA TAACAAGGTA
ATCCGGTATG CAAAGGTTGC AGTTTCGAAA GGAAACCCTT CAAACGAGGA AACAAGCGTC
TGA
|
|---|
| Protein sequence | MEDHDTTPVP ETPAAEPETS VPSPPGQNDE LAGQKKRYAE LNDRYLRLAA DFDNYRKRIA
RDHETQVQLA NERFAVDILE IADNLDRALK ADEDHLRTGV DQIRQLLAGV LARHGITPID
AQKISFDPGV HEAVAHIPSD EKEGTVIDVV SPGYRMHNKV IRYAKVAVSK GNPSNEETSV
|
|---|
| |