Gene Mboo_0278 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMboo_0278 
Symbol 
ID5412231 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Methanoregula boonei 6A8 
KingdomArchaea 
Replicon accessionNC_009712 
Strand
Start bp261042 
End bp263363 
Gene Length2322 bp 
Protein Length773 aa 
Translation table11 
GC content61% 
IMG OID640867494 
ProductDEAD/DEAH box helicase domain-containing protein 
Protein accessionYP_001403443 
Protein GI154149825 
COG category[R] General function prediction only 
COG ID[COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.235091 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCCGTTG CTGATGTGGT GCACTTCATC AGCACCAATC CCGTGTACCG CAGCCGGGTC 
GCCTGCCACA ACGTTACGGA CCCGGAACCG GCAGCGTACG GGAAGCTCGA CCGGCCTCTT
CCCGATGCGC TTGATGCATA CCTGGCCCAT GCCGGTATCC GGCTCTTCAC CCACCAGTGC
GAGGCAGTCA ACCTCCTCCG CGAACACAGG AACGTGATCA TCACAACCCC GACGGCGAGT
GGGAAGACCC TTGCATTCAA CCTCCCGGTC TTTGAGCGTA TGTCAGCAGA CCCGGATGCC
CGGGCGCTCT ACCTCTACCC CACAAAAGCG CTTGCAAACG ACCAGCTCGC AACGCTCCTT
GCAATGGAAA AGTTCACCGG TATCCCGGTA AAATCCGCGA TCTACGATGG GGATACCCCG
CAGTCGAAAA GGTCCGCGAT CCGGGAGCAC GCCCGGATCG TGATCTCGAA CCCGTACGAA
CTCCACCAGG TCCTCTCCTG GCACAGTAAA TGGAGCCCGT TTTTCTCAAA CCTCCAGTAC
GTTGTGCTGG ACGAAGCCCA CCGGTACCGG GGGATCTTCG GCTCGCAAAT CGCGCTTCTC
GTTCGAAGAC TCCGCCGGCT TGCCCGGTAT TATGGCACCG ATCCACAGTT CGTGCTTTCG
AGTGCAACGC TCGCAAACCC GGAGGAATTT GCAAAAAGAC TTGCTGGCCT GCCCTTCGTG
CAGGTGGAAA GCGATGGTTC CCCGCGGGGC AGACGACACT TTGTCCTCTA TAACCCATTT
TTCGATGGCG TTGGCGAGCG CTCCGCCCAT CAGGAATCAA AGGATCTTCT CGTTTCCTGT
GTCAAAGGCG ACCTCCAGGC GCTCTGCTTT GCCGGTTCCC GAAAGATCGC GGAGCTCGTT
GCGCTCTGGG CAAAAGAGGA CCTCCGGCGC AATTCCCCCC GGCTCGCAGA AAGTGTCCTT
GCCTACCGGG CCGGCTACCT CCCCGAAGAG CGCCGCTGGA TCGAGAGCCG GCTCAAAGGC
CGGGAGATCA GGGGAGTTGT CTCGACAAAC GCGCTCGAAC TCGGGATTGA TATCGGGTCG
CTCGATGCGG TGATTATCGA CGGTTACCCG GGCACGATGA TGTCCACCCG GCAGCAGGCC
GGCCGGGCGG GGAGAAAGGC CGGTGAGTCG CTTGCGGTGC TCGTTGCGCA GGCAAACCCG
CTCGACCAGT ACTTCATGCA CCACCCGGAA GAGTTTTTCT CCCGGCCCCA CGAGCATGCG
ATCATCGATA CGCAAAACCC GTACATCGTC TCCGGTCACC TCCTGTGCGC AGCAGCGGAA
CTTCCCCTCC ATGAAGAAAA GGACCGGGAA TTTTTCGGTG ACCGGTTCTC CCCGGTGCTT
TCAGATCTTG CCGGGAGCGG GCTTCTCTCC CGCACCTCCC GGGGCTTTGT GTATGCCGGG
AGAGGCCGGG CCGCGGAGGC GGTCACACTT GACGGGATGG CCGCGGAGAG CTTCCGGATC
CTCTGCGAGG GCCGGGTGCT TGAAACCATG GACCGGGCGC AGGCATACCG CGAGGCGCAC
AAGGGGGCGA TCATGCTCCA CCAGGGCATC ACGTACGTGG TAAATGAGAT GGACCTTGAG
AACCACACTG TCCGGGTGAG TGAAACGGAT GTCGATTACT ATACGCAGCC GCTCAAGGAC
ACAAGCCTGA AGGTTCTCGA AACGCTTGAA ACCCGGGAGA TACACGGTGT CACCTGTGCA
TTCGGCAACG TGGAAGTGAC CGAGCGGTAC ACCGCGTACA AGATTAAGAA GGGCGATACG
GTCCTTGGCG TCGAACCGCT CGATCTACCG CCGATCACGT TCCGGACCAA AGCCTTCTGG
CTGGTTGTCC CCGAGACTCT TGCCACACCG GTCTGTGCCA GCGGCCTCGA CCTTGCGGGC
GGGCTGCACG GGGCCGAGCA TGCACTCATC GCGCTCATGC CCTTCTTTGT TCTCTGCGAC
CGCTGGGATA TCGGCGGCCT CTCGTGTCCT GTATTTGGGG AGAGCGGCGA GCCGATGATC
TTTATCTACG ATGGGTACGA GGGCGGCATC GGCCTTGCAG AGAAGGCATA CACGCTGCTT
CCGGAGCTTT TCACCCGCAC GCACGAGATG GTGCGCGACT GTACGTGCAA GAAAGGCTGC
CCGTCCTGCA TCTACTCCCC CAAGTGCGGG AACGATAATA TCCCGCTCGA CAAGGAGGCA
ACGGTCATGA TCCTTGCCGG GCTTGCAGCG GCCGGGGCCG GAAATATTAC CATGCCCGGA
CAGGCCGGCA TCATCCCGGG CGCCGGGCCG GTGGCACAAT AA
 
Protein sequence
MAVADVVHFI STNPVYRSRV ACHNVTDPEP AAYGKLDRPL PDALDAYLAH AGIRLFTHQC 
EAVNLLREHR NVIITTPTAS GKTLAFNLPV FERMSADPDA RALYLYPTKA LANDQLATLL
AMEKFTGIPV KSAIYDGDTP QSKRSAIREH ARIVISNPYE LHQVLSWHSK WSPFFSNLQY
VVLDEAHRYR GIFGSQIALL VRRLRRLARY YGTDPQFVLS SATLANPEEF AKRLAGLPFV
QVESDGSPRG RRHFVLYNPF FDGVGERSAH QESKDLLVSC VKGDLQALCF AGSRKIAELV
ALWAKEDLRR NSPRLAESVL AYRAGYLPEE RRWIESRLKG REIRGVVSTN ALELGIDIGS
LDAVIIDGYP GTMMSTRQQA GRAGRKAGES LAVLVAQANP LDQYFMHHPE EFFSRPHEHA
IIDTQNPYIV SGHLLCAAAE LPLHEEKDRE FFGDRFSPVL SDLAGSGLLS RTSRGFVYAG
RGRAAEAVTL DGMAAESFRI LCEGRVLETM DRAQAYREAH KGAIMLHQGI TYVVNEMDLE
NHTVRVSETD VDYYTQPLKD TSLKVLETLE TREIHGVTCA FGNVEVTERY TAYKIKKGDT
VLGVEPLDLP PITFRTKAFW LVVPETLATP VCASGLDLAG GLHGAEHALI ALMPFFVLCD
RWDIGGLSCP VFGESGEPMI FIYDGYEGGI GLAEKAYTLL PELFTRTHEM VRDCTCKKGC
PSCIYSPKCG NDNIPLDKEA TVMILAGLAA AGAGNITMPG QAGIIPGAGP VAQ