| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_4176 |
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| Symbol | atpD |
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| ID | 5385446 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 4712973 |
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| End bp | 4714355 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640867204 |
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| Product | F0F1 ATP synthase subunit beta |
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| Protein accession | YP_001403118 |
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| Protein GI | 153948511 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0055] F0F1-type ATP synthase, beta subunit |
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| TIGRFAM ID | [TIGR01039] ATP synthase, F1 beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.0938283 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTACTG GAAAGATTAT CCAGGTAATC GGCGCCGTAG TGGACGTCGA ATTCCCCCAA
GACGCTGTAC CAAAAGTGTA CAACGCCCTT GAGGTAGAAG GCACAACTGA AAAGTTAGTG
CTGGAAGTTC AGCAACAGTT GGGCGGTGGT GTTGTTCGTT GTATCGCAAT GGGCTCTTCC
GATGGTCTGA GCCGTGGGTT GAAAGTAACC AACCTGGAAC ACCCGATCGA AGTACCGGTT
GGTAAAGCGA CCCTTGGCCG TATCATGAAC GTATTGGGTG AACCAATCGA CATGAAAGGT
CCTATCGGTG AAGAAGAGCG TTGGGCAATC CATCGCGAAG CGCCTTCTTA TGAAGAGCTT
GCTAGCTCAC AAGATCTGTT AGAAACCGGT ATCAAGGTTA TGGACCTGAT TTGTCCGTTT
GCTAAGGGCG GTAAAGTCGG TCTGTTCGGT GGTGCGGGTG TAGGTAAAAC AGTAAACATG
ATGGAGCTGA TCCGTAACAT CGCGATCGAG CACTCTGGGT ATTCTGTATT TGCCGGTGTA
GGTGAGCGTA CCCGTGAGGG TAATGACTTC TACCATGAAA TGACTGACTC CAACGTTTTG
GACAAAGTAT CCTTGGTTTA CGGCCAGATG AATGAGCCAC CAGGTAACCG TCTACGCGTT
GCACTGACCG GCCTGACCAT GGCGGAGAAA TTCCGTGATG AAGGTCGTGA CGTACTGCTG
TTCATCGATA ATATCTATCG TTATACCCTA GCTGGTACGG AAGTATCCGC ATTGCTGGGT
CGTATGCCAT CAGCGGTAGG TTATCAGCCA ACACTGGCTG AAGAGATGGG TGTGTTGCAG
GAACGTATTA CTTCCACTAA GACGGGTTCA ATCACCTCTG TTCAGGCCGT TTATGTACCT
GCGGATGACT TGACTGACCC ATCACCAGCA ACCACCTTTG CTCACTTGGA TGCAACCGTC
GTTCTGAGTC GTCAAATCGC CTCTCTGGGT ATTTATCCAG CAGTTGACCC ACTTGACTCT
ACCAGCCGTC AGCTTGATCC GTTGGTTGTT GGTCAGGAGC ACTACGATGT AGCGCGTGGC
GTGCAGTCTA TTCTGCAACG TTACCAAGAG CTGAAAGATA TCATCGCGAT CTTGGGTATG
GACGAGTTGT CAGAAGATGA CAAACTGGTG GTATCCCGTG CGCGTAAGAT TCAGCGCTTC
CTGTCTCAAC CGTTCTTTGT GGCTGAAGTC TTCACCGGTT CACCGGGCAA GTTTGTGTCG
CTGAAAGATA CCATTCGTGG TTTCAAAGGC ATCATGAATG GCGACTATGA CCACTTGCCG
GAACAGGCGT TCTACATGGT CGGTACCATT GAAGAAGCAG TGGAAAAAGC CAAGAAACTG
TAA
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| Protein sequence | MATGKIIQVI GAVVDVEFPQ DAVPKVYNAL EVEGTTEKLV LEVQQQLGGG VVRCIAMGSS
DGLSRGLKVT NLEHPIEVPV GKATLGRIMN VLGEPIDMKG PIGEEERWAI HREAPSYEEL
ASSQDLLETG IKVMDLICPF AKGGKVGLFG GAGVGKTVNM MELIRNIAIE HSGYSVFAGV
GERTREGNDF YHEMTDSNVL DKVSLVYGQM NEPPGNRLRV ALTGLTMAEK FRDEGRDVLL
FIDNIYRYTL AGTEVSALLG RMPSAVGYQP TLAEEMGVLQ ERITSTKTGS ITSVQAVYVP
ADDLTDPSPA TTFAHLDATV VLSRQIASLG IYPAVDPLDS TSRQLDPLVV GQEHYDVARG
VQSILQRYQE LKDIIAILGM DELSEDDKLV VSRARKIQRF LSQPFFVAEV FTGSPGKFVS
LKDTIRGFKG IMNGDYDHLP EQAFYMVGTI EEAVEKAKKL
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