Gene YpsIP31758_3899 details

Gene Information

• Locus tag: YpsIP31758_3899
• Symbol: rplF
• ID: 5386227
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: -
• Start bp: 4387435
• End bp: 4387968
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 640866930
• Product: 50S ribosomal protein L6
• Protein accession: YP_001402847
• Protein GI: 153950040
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0000000000139368
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTCGTG TTGCAAAAGC ACCCGTCGTC ATTCCTGCCG GCGTAGAGGT AAAACTCAAC 
GGTCAGGTTA TTTCGATTAA GGGTAAGAAC GGCGAGCTGA CTCGTACCGT CCATAGTGCT 
GTTGAAGTTA AGCAAGAAGA AAATACATTG ACTTTCGCTC CACGCGAAGG CGCTGTAGAC 
GGTTGGGCCC AAGCGGGTAC CACTCGTGCA CTACTTAACT CAATGGTCAT TGGTGTTACC 
GAAGGCTTCA CTAAGAAGCT TCAACTGGTA GGCGTAGGCT ACCGTGCCGC AGTTAAAGGC 
AACGTGGTGA ATTTAGCTTT AGGCTTCTCT CACCCAGTTG ACCATGAATT GCCGGCTGGC 
ATCACTGCCG AGTGCCCGAC CCAAACTGAA ATCGTGCTGA AAGGCGCTGA TAAGCAGGTG 
ATTGGTCAGG TTGCAGCAGA TTTGCGTGCC TACCGTCGTC CTGAGCCTTA TAAAGGCAAG 
GGTGTCCGTT ACGCCGACGA AGTCGTGCGT ACCAAAGAGG CTAAGAAGAA GTAA 

 

Protein sequence

MSRVAKAPVV IPAGVEVKLN GQVISIKGKN GELTRTVHSA VEVKQEENTL TFAPREGAVD 
GWAQAGTTRA LLNSMVIGVT EGFTKKLQLV GVGYRAAVKG NVVNLALGFS HPVDHELPAG 
ITAECPTQTE IVLKGADKQV IGQVAADLRA YRRPEPYKGK GVRYADEVVR TKEAKKK