| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3860 |
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| Symbol | rpoB |
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| ID | 5384807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 4350029 |
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| End bp | 4354057 |
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| Gene Length | 4029 bp |
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| Protein Length | 1342 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640866885 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001402811 |
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| Protein GI | 153950044 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00178402 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTTACT CCTATACCGA GAAAAAACGT ATTCGTAAGG ATTTTGGTAA ACGTCCACAA
GTTTTGGACA TACCTTATCT CCTTTCTATC CAACTTGACT CGTTCCAGAA ATTTATCGAG
CAAGATCCCG AAGGGCAGCA CGGACTAGAA GCAGCATTCC GTTCTGTTTT TCCTATCCAG
AGCTACAGCG GCAATTCGGA GCTGCAATAC GTTAGCTACC GTCTTGGTGA GCCAGTATTC
GACGTCAAAG AGTGCCAGAT CCGTGGTGTG ACTTATTCAG CACCGCTGCG CGTTAAACTG
CGTCTGGTTA TCTATGAGCG GGAAGCTCCG GAAGGTACGG TCAAAGACAT CAAAGAACAA
GAAGTCTACA TGGGTGAAAT TCCACTCATG ACCGAAAATG GTACCTTTGT TATTAACGGT
ACTGAGAGGG TTATCGTATC TCAGTTGCAC CGTAGCCCTG GTGTGTTCTT TGACAGCGAT
AAGGGTAAAA CCCATTCATC GGGTAAAGTG CTGTACAACG CACGTATCAT CCCTTACCGC
GGTTCATGGT TAGATTTCGA GTTTGATCCG AAAGACAACC TGTTTGTACG TATTGACCGT
CGCCGTAAAT TGCCTGCAAC CATCATTCTG CGTGCATTGA ATTTCACCAC TGCACAGATC
TTGGATCTGT TCTTTGAGAA AGTGGTCTTT GAGATTCGTG ATAACAAGCT GCAGATGGAA
TTGGTTCCAG AGCGCTTGCG CGGTGAAACG GCATCCTTTG ATATTGAAGC GAATGGCAAA
GTTTACGTCG AGAAAGCGCG TCGTATTACT GCTCGTCATA TTCGCCAGCT TGAAAAAGAC
GGCATTGACC GCATCGAAGT ACCGGTTGAA TACATTGCCG GTAAAGTTGT TGCTAAAGAC
TATGTTGATG CGAGCACCGG TGAACTGATC TGTGCCGCTA ACATGGAGCT GTCACTGGAT
CTGCTGGCTA AGTTGAGCCA AGCTGGCCAC AAGCAAATTG AAACATTGTT CACCAACGAT
CTGGATCACG GTGCTTATAT CTCCGAGACC CTGCGTGTTG ACCCAACCAG CGATCGTCTG
AGCGCTTTGG TTGAGATCTA TCGCATGATG CGTCCTGGCG AGCCACCAAC ACGTGAAGCC
GCTGAAAATC TGTTTGAGAA TCTGTTCTTC TCCGAAGACC GCTATGATTT ATCTGCGGTT
GGCCGGATGA AGTTCAACCG TTCTCTGCTG CGTGACGAGA TCGAAGGTTC CGGTATCCTG
AGCAAAGAAG ACATCACAGA AGTGATGAAA AAGCTCATTG ATATCCGTAA CGGTAGAGGC
GAAGTGGATG ATATCGACCA CTTGGGCAAC CGTCGTATTC GTTCCGTTGG CGAGATGGCT
GAAAACCAGT TCCGTGTAGG TCTGGTTCGT GTTGAGCGTG CAGTTAAAGA GCGTTTGTCT
CTGGGCGACC TTGATACTCT GATGCCACAG GACATGATCA ACGCCAAGCC TATCTCGGCT
GCGGTGAAAG AGTTCTTTGG TTCCAGCCAG TTATCCCAAT TTATGGACCA AAACAACCCG
TTGTCTGAGA TTACGCATAA GCGCCGTATC TCTGCATTGG GCCCGGGCGG TTTGACCCGT
GAACGTGCTG GCTTTGAAGT TCGAGACGTA CACCCGACTC ACTACGGTCG CGTATGTCCA
ATTGAAACGC CAGAAGGTCC AAACATCGGT TTGATCAACT CCTTGTCTGT ATATGCACAG
ACTAACGAGT ATGGTTTCCT GGAAACACCT TATCGTCGTG TACGTGATGG TGTGGTGACC
GATGAAATTA ACTATCTGTC TGCTATTGAA GAAGGCAACT TCGTTATCGC TCAGGCGAAC
TCCAACCTGG ATGATGAAGG CCGCTTTTTA GAAGATTTGG TGACTTGTCG TAGCAAAGGC
GAATCAAGCC TGTTTAGCCG CGAGCAAGTT GACTACATGG ACGTATCTAC TCAGCAAATC
GTATCCGTTG GTGCTTCTCT GATTCCATTC TTGGAACACG ATGACGCCAA CCGTGCCTTG
ATGGGCGCGA ACATGCAACG TCAGGCGGTT CCTACTCTGC GTGCTGATAA GCCGTTGGTG
GGTACTGGTA TGGAACGTGC AGTGGCGGTT GACTCAGGGG TAACCTCTGT AGCCAAACGT
GGCGGTACTG TTCAGTACGT AGATGCATCC CGTATCGTTA TTAAAGTTAA CGAAGATGAG
ATGCACCCAG GCGAAGCCGG CATTGATATT TATAACCTGA CCAAATACAC CCGTTCTAAC
CAGAACACCT GTATCAACCA GATGCCGTGT GTGAATCTGG GTGAGCCAAT CGAGCGCGGT
GACGTGCTGG CAGATGGCCC ATCGACAGAC CTGGGCGAAC TGGCATTGGG TCAGAACATG
CGCGTAGCGT TCATGCCTTG GAACGGTTAC AACTTCGAAG ACTCCATCTT AGTCTCCGAG
CGCGTGGTGC AAGAAGATCG CTTCACAACC ATCCACATTC AGGAATTGGC ATGTGTGTCA
CGCGACACCA AGTTAGGGCC TGAAGAGATC ACTGCCGATA TCCCGAACGT GGGTGAAGCC
GCGCTCTCCA AATTGGATGA ATCCGGTATC GTGTATATCG GTGCTGAAGT GACTGGTGGT
GACATTCTGG TTGGTAAGGT AACGCCTAAA GGTGAAACCC AACTGACGCC AGAAGAGAAA
CTGTTACGTG CGATCTTCGG TGAGAAAGCG TCTGATGTTA AAGACTCTTC TCTGCGTGTA
CCAAACGGTG TTTCTGGTAC GGTTATCGAC GTCCAGGTCT TTACTCGCGA TGGCGTAGAA
AAAGACAAAC GTGCGTTGGA AATCGAAGAG ATGCAACTGA AACAGGCTAA GAAAGACCTG
ACTGAAGAGT TGCAGATCCT GGAAGCGGGC TTGTTTGCAC GTATCCACGC GGTTCTGGTT
TCTGGTGGCA TCGAAGCTGA GAAGCTGAGC AAGTTACCAC GTGAACGCTG GCTGGAACTG
GGCCTGACCG ACGAAGACAA GCAAAACCAA CTGGAACAGT TGGCAGAGCA GTACGACGAA
ATGAAATCCG AATTCGAGAA GAAGATGGAT GCCAAGCGTC GTAAAATCAC CCAAGGCGAT
GATCTAGCAC CTGGTGTGCT GAAAATCGTC AAGGTGTATC TGGCGGTTAA ACGTCAGATT
CAACCGGGTG ATAAAATGGC CGGTCGTCAC GGTAACAAAG GTGTTATCTC TAAGATTAAC
CCAATCGAAG ATATGCCTTA CGATGAAAAC GGTACGCCGG TAGACATCGT TCTGAACCCG
CTGGGCGTAC CATCGCGTAT GAACATCGGT CAGATTTTGG AAACCCACTT AGGGATGGCA
GCGAAGGGTA TCGGCGAGAA AATCAACGCC ATGCTCAAGA AGCAGGAAGA AGTTGCCAAA
CTGCGTGAGT TCATCCAGAA GGCCTACGAT CTGGGCGACA ACGTTTGTCA GAAAGTTGAT
CTGAGCACCT TTACCGATGA CGAAGTACTG CGTCTGGCAG AGAACCTGAA AAAAGGTATG
CCAATCGCAA CGCCAGTCTT CGATGGTGCG ACAGAGAAAG AAATCAAGGA ACTGTTACAG
CTGGGTGGCC TGCCAACGTC TGGTCAGATT ACCTTGTTTG ACGGCCGTAC CGGTGAGCAA
TTTGAACGCC AGGTTACTGT CGGCTACATG TACATGCTGA AACTGAACCA CTTGGTTGAT
GACAAGATGC ATGCGCGTTC TACCGGTTCT TATAGCTTGG TTACTCAGCA GCCGCTGGGT
GGTAAAGCTC AGTTCGGTGG TCAGCGCTTC GGTGAGATGG AAGTGTGGGC GTTGGAGGCT
TATGGCGCCG CGTACACATT GCAAGAAATG CTTACCGTCA AGTCCGACGA TGTAAACGGC
CGTACCAAGA TGTACAAAAA CATCGTGGAT GGCGATCACC GTATGGAACC AGGAATGCCG
GAGTCCTTCA ACGTATTGTT GAAAGAAATC CGCTCTCTGG GCATCAATAT CGAGCTGGAA
GAAGAGTAA
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| Protein sequence | MVYSYTEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFQKFIE QDPEGQHGLE AAFRSVFPIQ
SYSGNSELQY VSYRLGEPVF DVKECQIRGV TYSAPLRVKL RLVIYEREAP EGTVKDIKEQ
EVYMGEIPLM TENGTFVING TERVIVSQLH RSPGVFFDSD KGKTHSSGKV LYNARIIPYR
GSWLDFEFDP KDNLFVRIDR RRKLPATIIL RALNFTTAQI LDLFFEKVVF EIRDNKLQME
LVPERLRGET ASFDIEANGK VYVEKARRIT ARHIRQLEKD GIDRIEVPVE YIAGKVVAKD
YVDASTGELI CAANMELSLD LLAKLSQAGH KQIETLFTND LDHGAYISET LRVDPTSDRL
SALVEIYRMM RPGEPPTREA AENLFENLFF SEDRYDLSAV GRMKFNRSLL RDEIEGSGIL
SKEDITEVMK KLIDIRNGRG EVDDIDHLGN RRIRSVGEMA ENQFRVGLVR VERAVKERLS
LGDLDTLMPQ DMINAKPISA AVKEFFGSSQ LSQFMDQNNP LSEITHKRRI SALGPGGLTR
ERAGFEVRDV HPTHYGRVCP IETPEGPNIG LINSLSVYAQ TNEYGFLETP YRRVRDGVVT
DEINYLSAIE EGNFVIAQAN SNLDDEGRFL EDLVTCRSKG ESSLFSREQV DYMDVSTQQI
VSVGASLIPF LEHDDANRAL MGANMQRQAV PTLRADKPLV GTGMERAVAV DSGVTSVAKR
GGTVQYVDAS RIVIKVNEDE MHPGEAGIDI YNLTKYTRSN QNTCINQMPC VNLGEPIERG
DVLADGPSTD LGELALGQNM RVAFMPWNGY NFEDSILVSE RVVQEDRFTT IHIQELACVS
RDTKLGPEEI TADIPNVGEA ALSKLDESGI VYIGAEVTGG DILVGKVTPK GETQLTPEEK
LLRAIFGEKA SDVKDSSLRV PNGVSGTVID VQVFTRDGVE KDKRALEIEE MQLKQAKKDL
TEELQILEAG LFARIHAVLV SGGIEAEKLS KLPRERWLEL GLTDEDKQNQ LEQLAEQYDE
MKSEFEKKMD AKRRKITQGD DLAPGVLKIV KVYLAVKRQI QPGDKMAGRH GNKGVISKIN
PIEDMPYDEN GTPVDIVLNP LGVPSRMNIG QILETHLGMA AKGIGEKINA MLKKQEEVAK
LREFIQKAYD LGDNVCQKVD LSTFTDDEVL RLAENLKKGM PIATPVFDGA TEKEIKELLQ
LGGLPTSGQI TLFDGRTGEQ FERQVTVGYM YMLKLNHLVD DKMHARSTGS YSLVTQQPLG
GKAQFGGQRF GEMEVWALEA YGAAYTLQEM LTVKSDDVNG RTKMYKNIVD GDHRMEPGMP
ESFNVLLKEI RSLGINIELE EE
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