Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_3853 |
Symbol | thiC |
ID | 5388544 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 4339018 |
End bp | 4341063 |
Gene Length | 2046 bp |
Protein Length | 681 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640866878 |
Product | thiamine biosynthesis protein ThiC |
Protein accession | YP_001402804 |
Protein GI | 153949362 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 65 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCTAATA ATACAACGTC ATTACCCGCT GAAAATTCGT CACACCCACG TAAAGGCACA CCTATTCGTA AAAAGCAGCG CGAAGAGGCC CAACAGTTTA TTAATACCTT ACAAGGCGTT ACTTTCCCCA ACTCCCAACG TATTTATCTA CAAGGCTCTC GGCCCGATAT TCAAGTGCCG ATGCGTGAAA TCCAACTCAG CCCGACGCAA ATCGGCGGCA GTAAAAACGA ACCACGCTAT GAAGATAATG AGGCCATCCC GGTCTATGAC ACCTCCGGTC CCTATGGTGA CCCACAAGCT AAACTGGATG TTCACAACGG GCTGCCTAAA CTGCGTGCCG CTTGGGTCGC TGATCGCCAA GATACTGAAG CGCTGGCATC TGTCAGTTCC GGCTTTACCC AACAGCGTTT GGCTGATGAA GGCCTGGACC ATTTACGTTT TGAGCATCTA CCCCGCCCAC GGAAAGCAGC CACTGGTCAA TGTGTGACTC AGTTGCATTA CGCCCGACAG GGGAAAATCA CGCCAGAGAT GGAGTTTATC GCCCTACGGG AAAATATGGG CCGTGAACGT ATTCGGGGTG AAGTCTTGCT TCAACAACAT CCGGGACAAG CGTTTGGTGC CCATCTGCCG GAAAATATCA CCGCCGAGTT TGTGCGTCAG GAAGTGGCGG CCGGCCGAGC CATCATCCCC GCCAATATTA ATCACCCAGA ATCTGAACCA ATGATTATTG GCCGTAATTT TCTGGTCAAA GTGAATGCCA ACATCGGTAA TTCCGCCGTG ACCTCTTCCA TTGAAGAAGA GGTAGAAAAA CTGGTCTGGT CTACCCGTTG GGGTGCCGAT ACGGTGATGG ACTTATCTAC GGGCCGCTAT ATTCATGAAA CGCGGGAATG GATCCTACGT AACAGCCCGG TCCCTATTGG CACGGTACCT ATCTATCAGG CGCTGGAAAA AGTTAATGGC GTGGCCGAAA ATCTGACCTG GGAAATGTTC CGTGACACCC TGTTAGAGCA GGCAGAGCAA GGGGTAGACT ATTTTACTCT CCACGCGGGG GTCTTGTTGC GCTATGTGCC GATGACTGCC AAACGCCTAA CCGGTATCGT CTCTCGCGGC GGTTCAATTA TGGCAAAATG GTGCCTTTCG CATCATCAGG AAAACTTCCT GTATCAGCAT TTCCGCGAAA TCTGTCAGAT TTGTGCAGCC TATGACGTTT CATTATCACT GGGCGATGGC CTGCGCCCTG GCTCTATTCA AGATGCCAAT GATGAGGCCC AATTCGCCGA ACTGCATACC TTGGGTGAAT TGACCAAAAT CGCCTGGGAG TATGATGTAC AGGTGATGAT CGAAGGCCCA GGGCATGTGC CGATGCAGAT GATCCGCCGC AATATGACCG AGGAACTGGA ACACTGCCAC GAAGCGCCAT TTTATACCTT AGGCCCACTG ACCACGGACA TCGCACCGGG CTATGACCAC TTTACCTCAG GGATTGGTGC AGCGATGATC GGCTGGTTCG GTTGTGCCAT GCTCTGTTAT GTCACCCCCA AAGAGCACCT TGGTCTGCCG AATAAAGAGG ATGTCAAACA GGGGCTTATT ACTTACAAAA TTGCCGCGCA CGCCGCAGAT TTGGCTAAAG GCCACCCCGG TGCGCAAATT CGTGATAACG CCATGTCCAA AGCTCGCTTT GAGTTCCGCT GGGAAGATCA ATTCAATTTG GCGCTTGATC CAGCAACAGC CCGCGCTTAC CACGATGAAA CCCTGCCGCA AGAGTCCGGG AAAGTCGCTC ATTTTTGTTC CATGTGCGGC CCGAAATTCT GTTCAATGAA AATCTCACAA GAGGTCCGCG ATTATGCTGC GGCACAAGAA CAAGCGGCCG CACAAGCACA AGCTGCTACA CCAACCACCG CAGCACAACC AATAGACATC ACGCAGCCAA TTAATATGCT GCAATCAGGG ATGGAAAAAA TGTCAGCCGA GTTTCGCTCC CGTGGCAGTG AGCTATACCA CCGCCCGGCG AATCTGAGTG CGGAGGCCAA TAATGAGCCA ACTTGA
|
Protein sequence | MSNNTTSLPA ENSSHPRKGT PIRKKQREEA QQFINTLQGV TFPNSQRIYL QGSRPDIQVP MREIQLSPTQ IGGSKNEPRY EDNEAIPVYD TSGPYGDPQA KLDVHNGLPK LRAAWVADRQ DTEALASVSS GFTQQRLADE GLDHLRFEHL PRPRKAATGQ CVTQLHYARQ GKITPEMEFI ALRENMGRER IRGEVLLQQH PGQAFGAHLP ENITAEFVRQ EVAAGRAIIP ANINHPESEP MIIGRNFLVK VNANIGNSAV TSSIEEEVEK LVWSTRWGAD TVMDLSTGRY IHETREWILR NSPVPIGTVP IYQALEKVNG VAENLTWEMF RDTLLEQAEQ GVDYFTLHAG VLLRYVPMTA KRLTGIVSRG GSIMAKWCLS HHQENFLYQH FREICQICAA YDVSLSLGDG LRPGSIQDAN DEAQFAELHT LGELTKIAWE YDVQVMIEGP GHVPMQMIRR NMTEELEHCH EAPFYTLGPL TTDIAPGYDH FTSGIGAAMI GWFGCAMLCY VTPKEHLGLP NKEDVKQGLI TYKIAAHAAD LAKGHPGAQI RDNAMSKARF EFRWEDQFNL ALDPATARAY HDETLPQESG KVAHFCSMCG PKFCSMKISQ EVRDYAAAQE QAAAQAQAAT PTTAAQPIDI TQPINMLQSG MEKMSAEFRS RGSELYHRPA NLSAEANNEP T
|
| |