| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3653 |
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| Symbol | hfq |
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| ID | 5387169 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 4118030 |
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| End bp | 4118335 |
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| Gene Length | 306 bp |
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| Protein Length | 101 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640866673 |
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| Product | RNA-binding protein Hfq |
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| Protein accession | YP_001402607 |
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| Protein GI | 153947063 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1923] Uncharacterized host factor I protein |
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| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 0.588771 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTAAGG GGCAATCTTT GCAAGATCCG TTCCTGAACG CATTGCGTCG TGAACGGGTT
CCGGTTTCTA TTTATTTAGT GAATGGTATT AAACTGCAGG GCCAAGTTGA GTCTTTTGAT
CAGTTTGTCA TTCTGTTAAA AAATACAGTC AGCCAGATGG TTTATAAGCA CGCCATCTCT
ACTGTTGTGC CTTCTCGTCC GGTTTCGCAT CACAGCAATA CTCCGAGCGG TAGCACCAAT
AATTATCATG GTAGTAATCC GTCTGCGCCG CAACAGCCGC AGCAGGACAG TGATGACGCT
GAATAA
|
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| Protein sequence | MAKGQSLQDP FLNALRRERV PVSIYLVNGI KLQGQVESFD QFVILLKNTV SQMVYKHAIS
TVVPSRPVSH HSNTPSGSTN NYHGSNPSAP QQPQQDSDDA E
|
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