| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3603 |
|---|
| Symbol | rrmJ |
|---|
| ID | 5384760 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 4069711 |
|---|
| End bp | 4070340 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640866623 |
|---|
| Product | 23S rRNA methyltransferase J |
|---|
| Protein accession | YP_001402557 |
|---|
| Protein GI | 153950455 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0293] 23S rRNA methylase |
|---|
| TIGRFAM ID | [TIGR00438] cell division protein FtsJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.000006183 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAATA AAAAGCGTTC GGCTAGCTCC AGTCGCTGGT TACAAGAACA CTTTAGCGAT
AAATATGTAA TTCAGGCACA GAAAAAGGGG CTACGCTCTC GTGCCTGGTT TAAACTTGAT
GAAATACAAC AGAGCGATAA ACTTTTTAAA CAGGGTATGA CAGTTGTTGA CCTAGGTGCA
GCCCCTGGTG GTTGGTCCCA ATATGCTGTA ACCCAGATTG GCAGTAAAGG GCGAGTTATC
GCATGTGATC TTCTACCAAT GGATCCTATC GTTGGTGTCG ATTTCCTTCA GGGCGATTTT
CGTGATGAAC TGGTCCTGAA AGCTTTACTT GAGCGCGTTG GGGATAAAAA AGTTCAGGTG
GTCATGTGTG ATATGGCCCC GAATATGAGT GGTACTCCGG CAGTCGATAT ACCTAAATCA
ATGTATCTGG TTGAATTAGC TTTAGATATG TGTCGTGATG TACTTGCACC AGGTGGAAGT
TTCCTGGTGA AGGTGTTCCA GGGAGATGGC TTTGATGAAT ACCTACGGGA AATTCGCTCC
CTGTTTACGA AAGTTAAGAT TCGTAAGCCA GACGCTTCTC GTGCGCGATC GCGTGAAGTG
TACATTGTAG CGACAGGGCG GAAACTGTAG
|
|---|
| Protein sequence | MSNKKRSASS SRWLQEHFSD KYVIQAQKKG LRSRAWFKLD EIQQSDKLFK QGMTVVDLGA
APGGWSQYAV TQIGSKGRVI ACDLLPMDPI VGVDFLQGDF RDELVLKALL ERVGDKKVQV
VMCDMAPNMS GTPAVDIPKS MYLVELALDM CRDVLAPGGS FLVKVFQGDG FDEYLREIRS
LFTKVKIRKP DASRARSREV YIVATGRKL
|
|---|
| |