| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3545 |
|---|
| Symbol | valS |
|---|
| ID | 5386484 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 4005341 |
|---|
| End bp | 4008238 |
|---|
| Gene Length | 2898 bp |
|---|
| Protein Length | 965 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640866561 |
|---|
| Product | valyl-tRNA synthetase |
|---|
| Protein accession | YP_001402499 |
|---|
| Protein GI | 153948685 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0525] Valyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.562165 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAATA CACCTTCTCA TATCAACAAA ACTGAGCCGT CCCTCGATAA AACATACAGC
CCGCAGGAAA TTGAACAGCC GCTGTATGAA CATTGGGAGA AACAGGGTTA TTTCAAACCA
AACGGCGATA CCAGCAAAGA AAGCTATTGC ATCATGATCC CACCGCCGAA CGTGACCGGC
AGCCTGCATA TGGGTCATGC ATTCCAGCAG ACCATCATGG ATACCTTGAT TCGCTATCAG
CGTATGCAGG GGAAAAATAC CCTATGGCAG GCAGGTACCG ATCATGCAGG TATCGCGACC
CAGATGGTTG TGGAACGCAA GATTGCCGCC GAAGAAGGCA AGACCCGCCA CGATTACGGC
CGTGATGCGT TTATCGATAA AATCTGGGAG TGGAAAGGCG AATCCGGCGG CACCATTACT
CGCCAAATGC GTCGTTTGGG TAACTCCGTG GACTGGGAAC GTGAACGTTT CACCATGGAT
GAAGGCTTGT CCAACGCAGT TAAAGAAGTG TTCGTGCGCC TTCATAAAGA AGATCTGATT
TACCGTGGCA AGCGCCTGGT GAACTGGGAT CCGAAACTGC GCACTGCCAT TTCTGATCTG
GAAGTAGAAA ACCGCGAATC CAAAGGTTCC ATGTGGCACC TGCGTTATCC GCTGGCCGAT
GGTGCCAAGA CTGCGGAAGG CAAAGATTAT CTGGTGGTGG CGACCACCCG TCCAGAAACC
GTTCTGGGTG ATACTGGTGT CGCGGTTAAC CCGGAAGATC CACGTTATAA AGATCTGATC
GGCAAAGAAG TGATCCTGCC GCTGGTTGGC CGCCGTATTC CGATCCTCGG TGACGAACAC
GCCGATATGG AGAAGGGTAC TGGCTGTGTG AAAATCACTC CAGCCCACGA CTTTAATGAC
TATGAAGTCG GTAAGCGCCA TGCCCTGCCA ATGATCAACA TTCTGACCTT CGACGGGGAT
ATCCGCTCAG AAGCCGAGGT ATTTGATACC CACGGTGAAG CGACTGATGC ATTTAGTAAC
GCTATTCCTG CGCAGTTCCA AGGGCTAGAA CGTTTTGCTG CCCGTAAAGC GGTGGTCGCG
GAATTCGAGA AACTCGGTCT GTTGGAAGAG GTTAAACCTC ATGACCTGAC AGTACCTTAT
GGCGACCGTG GCGGCGTGGT TATCGAACCC ATGCTGACCG ATCAATGGTA CGTGCGCACT
GCCCCGCTGG CCAAAGTCGC GATTGAAGCC GTAGAGAACG GCGAGATCCA GTTCGTCCCT
AAACAGTACG AAAACATGTA TTACTCATGG ATGCGCGATA TCCAGGACTG GTGTATCTCA
CGTCAATTGT GGTGGGGCCA CCGTATTCCG GCCTGGTATG ACGAGCAGGG TAATGTGTAT
GTTGGCCGCG ACGAAGCCGA AGTGCGCCGC GACAATAATC TGGGCGCCGA GGTTGCTTTG
CGTCAGGACG AAGATGTGTT GGACACCTGG TTCTCATCCG GCCTGTGGAC ATTCTCTACA
CTGGGCTGGC CTGAACAAAC CGACGCACTG AAAACCTTCC ATCCGACCAG CGTGGTCGTC
AGTGGTTTTG ATATTATTTT CTTCTGGATT GCCCGCATGA TCATGCTGAC CATGCACTTT
ATGAAAGATG AAAATGGTAA ACCACAGGTG CCGTTCAAAA CAGTCTACAT GACCGGTCTG
ATCCGTGATG ACGAAGGGCA GAAAATGTCC AAGTCCAAAG GTAACGTGAT CGACCCACTG
GATATGGTTG ACGGTATCTC TTTGGAAGCG TTGCTGGAAA AACGTACCGG CAATATGATG
CAGCCACAGT TGGCGGAGAA AATTCGCAAG CGCACTGAAA AGCAGTTCCC GAACGGTATC
GAGCCGCACG GCACTGATGC ACTGCGCTTC ACGTTGGCGG CACTGGCCTC AACTGGCCGT
GATATCAACT GGGATATGAA ACGCCTGGAA GGGTATCGCA ATTTCTGTAA TAAGCTGTGG
AATGCCAGCC GTTTCGTGCT GATGAATACC GAAGGGCAGG ATTGTGGGCA GAACGGTGGC
GAAATGGTGT TATCACTGGC TGACCGCTGG ATTTTGGCGG AATTCAACCA GACCATCAAA
GCCTACCGTG AAGCGATGGA CACCTACCGC TTCGATCTGG CGGCCGGTAT TCTGTATGAA
TTCACCTGGA ACCAGTTCTG TGACTGGTAT CTGGAACTGA CCAAGCCGGT GATGAACAGT
GGCTCTGAAG CTGAACTGCG AGGCACTCGC CACACGCTGA TTCAGGTGCT GGAAGCCTTG
CTGCGCTTGG CGCACCCCAT CATTCCTTAC ATCACTGAAA CTATCTGGCA GCGGGTGAAA
AACCTGAAAG GCATTACTGC AGACACGATT ATGTTGCAGC CTTTCCCAGA ATATGATGCC
AGCCAAGTCG ATGAACAAGC ACTCAGTGAT TTAGAGTGGA TTAAGCAAAC CATTATCGCG
GTGCGTAATA TCCGGGCGGA AATGAACATT GCACCGGGTA AACCACTTGA GGTCATGCTG
CGGGGTGCCA ACGCACAAGC ACAGCGTCGG GTGCTGGAAA ACCAGAGTTT TATCCAGTCA
TTGGCGCGCT TGTCCTCTCT CACCTTGCTA GCTGAAGGTG ATAAAGGCCC AGTATCGGTC
ACTAAATTGG TTGAAGGTGC TGAAGTGCTG ATCCCAATGG CAGGCCTGAT CGATAAAGCC
ACCGAGTTGG ATCGTCTGGC GAAGGAAGTG GCGAAACTGG ATGCTGAAAT TGAGCGCATC
GAAGGCAAAC TGGGTAACGA AGGTTTTGTG GCGCGGGCGC CAGAAGCGGT AGTTGCCAAA
GAGCGTGAAA GACTGGCCGC TTGTGCTGAA GCCAAACAGA AGTTAATTGA GCAGCAGGCA
ACTATCGCTG CACTATAA
|
|---|
| Protein sequence | MENTPSHINK TEPSLDKTYS PQEIEQPLYE HWEKQGYFKP NGDTSKESYC IMIPPPNVTG
SLHMGHAFQQ TIMDTLIRYQ RMQGKNTLWQ AGTDHAGIAT QMVVERKIAA EEGKTRHDYG
RDAFIDKIWE WKGESGGTIT RQMRRLGNSV DWERERFTMD EGLSNAVKEV FVRLHKEDLI
YRGKRLVNWD PKLRTAISDL EVENRESKGS MWHLRYPLAD GAKTAEGKDY LVVATTRPET
VLGDTGVAVN PEDPRYKDLI GKEVILPLVG RRIPILGDEH ADMEKGTGCV KITPAHDFND
YEVGKRHALP MINILTFDGD IRSEAEVFDT HGEATDAFSN AIPAQFQGLE RFAARKAVVA
EFEKLGLLEE VKPHDLTVPY GDRGGVVIEP MLTDQWYVRT APLAKVAIEA VENGEIQFVP
KQYENMYYSW MRDIQDWCIS RQLWWGHRIP AWYDEQGNVY VGRDEAEVRR DNNLGAEVAL
RQDEDVLDTW FSSGLWTFST LGWPEQTDAL KTFHPTSVVV SGFDIIFFWI ARMIMLTMHF
MKDENGKPQV PFKTVYMTGL IRDDEGQKMS KSKGNVIDPL DMVDGISLEA LLEKRTGNMM
QPQLAEKIRK RTEKQFPNGI EPHGTDALRF TLAALASTGR DINWDMKRLE GYRNFCNKLW
NASRFVLMNT EGQDCGQNGG EMVLSLADRW ILAEFNQTIK AYREAMDTYR FDLAAGILYE
FTWNQFCDWY LELTKPVMNS GSEAELRGTR HTLIQVLEAL LRLAHPIIPY ITETIWQRVK
NLKGITADTI MLQPFPEYDA SQVDEQALSD LEWIKQTIIA VRNIRAEMNI APGKPLEVML
RGANAQAQRR VLENQSFIQS LARLSSLTLL AEGDKGPVSV TKLVEGAEVL IPMAGLIDKA
TELDRLAKEV AKLDAEIERI EGKLGNEGFV ARAPEAVVAK ERERLAACAE AKQKLIEQQA
TIAAL
|
|---|
| |