| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3487 |
|---|
| Symbol | |
|---|
| ID | 5386215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 3933830 |
|---|
| End bp | 3935107 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640866500 |
|---|
| Product | GGDEF domain-containing protein |
|---|
| Protein accession | YP_001402442 |
|---|
| Protein GI | 153949954 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCGA AAAAAAATCA CAATAGCGCA GAAAAACTCC CGACACTTGC TGGTGTCTTG
CGGCGCATAC ATTTGTCTGT CGCCATTGTG TCTGTAGTAA CAGCCTGTAT TTTCCTCACC
GTCGCCGCGT TATTTGCCTT ACGGGTTTAT GTTGATCACA ACCTGCATTT GATCGCCCGC
GCCATCAGTT ATACCACCGA GGCCGCCGTC GTTTTTGGTG ATAACGTGGA GGCTAACGAG
TTATTGGCGC TGATTGCCTC GAATGAAGAA GTGGCAGAAG CGAAGATCAT TGATAAACAT
AATCGTCAGA TAGCTTACTG GGCGCTACCT GACGATGGGC CTATCCATCA TATGGAGCAA
ATTGTTGCCC GTTGGATACT GCCTGCCCCT GTCGTGTTAC CGATGTTTCA TGCTGGCGAT
GAGATTGGCA AAATTGTCAT TGTTGGGCAT GGCGGCAGCT TATTGCGTTT CTTGCTACAA
GGTCTGGCGG GGATGTTGGC GTGCCTGACG GTCAGTACAT TGGTCGCACT TTTCCTATCA
CGGCGGATGT TGCTTGGTAT TGTTGGCTCG CTTAAGAGGA TCACTGAGGT GGCTCATAAT
GTCAGCCGCC ACCGCAGTTT TGGTCAACGG GTTCCTTCAG CAAAGGTGGC CGAATTGAAC
GAGCTCAGTA ATGACTTTAA CGGGTTGCTG GAAGAGCTTG AGGTGTGGCA GAAACATCTG
ACGCAAGAAA ATGACTCACT GGCTTACCGT GCCGCCCATG ACAGCCTGAC CGGACTCGCG
AATCGTACGT TTTTTGAAGG GCGCTTGAGC CGGACGCTTA ATGATTGCCA ACCCGGCGAA
CACACCGCCG TGTTATTCCT GGATGGCGAC CATTTTAAAG ACGTCAATGA TAATTATGGC
CATGCCGCAG GCGATCTTGT GCTCACAACA ATTGCCGTCC GTATCCGCGC CTTATTGCGT
GAAACTGATT TAGTGGCTCG CTTAGGTGGC GATGAGTTTG CGGTGTTACT GACCCCTATC
CACAACTTGG ATGATGTTTT AACTATTGCC GATCATATTA TCGACAGTAT GGCCCTACCA
ATAATACTGG CTGAAGGCTG TGAAATTACC GTCTCACTCA GTATTGGTAT TGCTGTTTAT
CCTGATCATG CACAAACGCC GGAAAAATTA TTACAACGAG CGGATGAAGC GATGTATCAG
GCGAAGAAAA ACTTCCGGTC TGGCAAGCGT ATTTTTGCCT ATCAGCCGAA TACGACTAAC
ACAGAAAGTT TAGGATAG
|
|---|
| Protein sequence | MKPKKNHNSA EKLPTLAGVL RRIHLSVAIV SVVTACIFLT VAALFALRVY VDHNLHLIAR
AISYTTEAAV VFGDNVEANE LLALIASNEE VAEAKIIDKH NRQIAYWALP DDGPIHHMEQ
IVARWILPAP VVLPMFHAGD EIGKIVIVGH GGSLLRFLLQ GLAGMLACLT VSTLVALFLS
RRMLLGIVGS LKRITEVAHN VSRHRSFGQR VPSAKVAELN ELSNDFNGLL EELEVWQKHL
TQENDSLAYR AAHDSLTGLA NRTFFEGRLS RTLNDCQPGE HTAVLFLDGD HFKDVNDNYG
HAAGDLVLTT IAVRIRALLR ETDLVARLGG DEFAVLLTPI HNLDDVLTIA DHIIDSMALP
IILAEGCEIT VSLSIGIAVY PDHAQTPEKL LQRADEAMYQ AKKNFRSGKR IFAYQPNTTN
TESLG
|
|---|
| |