Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_3348 |
Symbol | |
ID | 5388553 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 3763621 |
End bp | 3764391 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640866363 |
Product | ABC transporter, permease protein |
Protein accession | YP_001402305 |
Protein GI | 153947102 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.0192428 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCCGCC TGTATTGGAT AGCCTTGCAG AGTATTTGGA TCAAAGAGAT TACGCGGTTT GCACGTATTT GGATTCAAAC CCTGGTGCCA CCTGTGATTA CGATGTCTCT CTATTTTGTT ATTTTCGGCA ACCTAATTGG TGCCCGGATT GGCGATATGG GGGGCTTTGA TTACATGCAG TTTATCGTCC CTGGTTTGAT TATGATGGCG GTGATCACTA ACGCCTATTC TAACGTGGCG GCATCGTTCT ACGGGGCGAA GTTTCAGCGC AGTATCGAAG AGTTGCTGGT AGCCCCTGTG CCTACGCATA TTGTTATTAT CGGTTATGTC GGTGGTGGGG TGGCGCGCGG CATTTGTGTC GGCATTCTGG TGACGATTAT CTCGTTATTC TTCGTGCCAC TGCATGTCCA TTCGTGGCCA ATGATTGCCT TGACGCTGAT ACTAACGGCC ATTCTATTCT CCCTGGGAGG ATTGTTGAAT GCAGTCTTTG CCAAGACATT TGATGACATC AGTTTGGTGC CGACTTTTGT GCTGACGCCA TTGACCTATC TGGGAGGGGT ATTTTATTCG TTATCATTAT TGCCACCTTT CTGGCAGGCA GTCTCGAAGC TTAACCCTAT CGTCTATATG ATCAGCGGTT TCCGTTATGG GTTCCTCGGT ATTACTGATG TCTCACTGGC CTACACCATT GGCGTTTTAG TGGTGTTTAT CGCGGTATTC TATGCGTGGG CGTGGTATTT GATTGAGCGT GGAACCGGGT TACGGACCTA A
|
Protein sequence | MTRLYWIALQ SIWIKEITRF ARIWIQTLVP PVITMSLYFV IFGNLIGARI GDMGGFDYMQ FIVPGLIMMA VITNAYSNVA ASFYGAKFQR SIEELLVAPV PTHIVIIGYV GGGVARGICV GILVTIISLF FVPLHVHSWP MIALTLILTA ILFSLGGLLN AVFAKTFDDI SLVPTFVLTP LTYLGGVFYS LSLLPPFWQA VSKLNPIVYM ISGFRYGFLG ITDVSLAYTI GVLVVFIAVF YAWAWYLIER GTGLRT
|
| |