Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_3287 |
Symbol | |
ID | 5387075 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 3698017 |
End bp | 3698787 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640866302 |
Product | short chain dehydrogenase |
Protein accession | YP_001402244 |
Protein GI | 153949050 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 47 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAAACG ACTATAAATG GTTTGATACG GCGTTTTCTC TGAGTGGCAA AGTGGCGGCC ATTACCGGCG GTGCCACGGG GATTGGTCAC GCGATTGCCG AACTGTACTT AGCCAAAGGT GCACGAGTGG TGTTGATGGA TTGTGCCGAT AATGTCGCTG AAATAGCCGA ACAACTGGAC AGGGATAATG CCGTCGGATT GCATTGCGAT GTGAGTGATA GCCAATCCGT CAGACAGGCG GTCGCTCAGG CAATCGGGGC TTTTGGCCAG TTGGATATTT TAGTGAATAG CGCCGGTATT GCTGCGCTGG ATCCTGCGGA AAAAGTGCGT GAACAAGATT GGGACAGAAC GATTGATATC AACCTGAAAG GGGTCTTTCT CATGTGCCAG GAAGTGGGAA AACATTTTAT TCAGCATGGG CATGGCAAAA TCGTCAATTT AGCTTCTCAA GCGGGTGTTG TGGCGCTCCC TAATCACTTG GCGTATTGCG CCAGTAAATT TGGCGTGATT GGTATCACCA AAGTACTGGC ATTAGAGTGG GGTCCGTTGG ACATACAGGT TAATGCGATT TCACCGACCG TGGTGCTGAC CGCGTTAGGC CAGAAAGCGT GGTCAGGCCA ACTCGCTGAA GATATGAAGC TGAAAATACC CGCTCGTCGT TTTGCTTATC CCGCCGAAGT TGCAGCGTGC GCACTGTTCT TAGCCAGTGA TGCAGCCAAT ATGATAACCG GTGAAAATTT AGTCATTGAT GGTGGGTATA CCATCCAATA G
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Protein sequence | MPNDYKWFDT AFSLSGKVAA ITGGATGIGH AIAELYLAKG ARVVLMDCAD NVAEIAEQLD RDNAVGLHCD VSDSQSVRQA VAQAIGAFGQ LDILVNSAGI AALDPAEKVR EQDWDRTIDI NLKGVFLMCQ EVGKHFIQHG HGKIVNLASQ AGVVALPNHL AYCASKFGVI GITKVLALEW GPLDIQVNAI SPTVVLTALG QKAWSGQLAE DMKLKIPARR FAYPAEVAAC ALFLASDAAN MITGENLVID GGYTIQ
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