Gene YpsIP31758_3227 details

Gene Information

• Locus tag: YpsIP31758_3227
• Symbol: rimM
• ID: 5384548
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: -
• Start bp: 3634216
• End bp: 3634764
• Gene Length: 549 bp
• Protein Length: 182 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640866236
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001402184
• Protein GI: 153949535
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 33
• Plasmid unclonability p-value: 0.155768
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAAGC AACTCAATCC TGCAGTTCCC GACCAGCCGA TTGTTCTCGG TAAAATGGGT 
TCTACATACG GCATTCGCGG TTGGCTCAGA GTATTTTCAT CCACCGAGAA CGCCGAAAGC 
ATTTTTGACT ATCAGCCGTG GTTTATCCAG CAGGCGGGTA AGTGGCAGCA TGTCGAGTTG 
GAAGACTGGA AGCGCCACAG TCAGGATCTG ATCATCAAAG TGAAAGGTGT TGATGATCGG 
GATGCCGCGA ATTTACTGAC TAATTGCGAA ATTTTCGTAG ATTCCACACA ACTCCCTGCA 
TTGGAAGAGG ATGATTACTA CTGGAAAGAC CTTATGGGTT GCCAAGTAGT AACCACCACG 
GGTTATGAAC TGGGTAAAAT CATCGATATG ATGGAAACCG GTTCTAACGA TGTCATGGTC 
GTGAAGGCAA ATCTGAAAGA TGCATTCGGT ATGAAGGAGC GGTTGGTCCC GTTTCTTCAT 
GGGCAGGTTA TCAAGAAAGT CGATCTCACT GCTCAACGTG TTGAAGTAGA TTGGGATCCT 
GGTTTTTGA 

 

Protein sequence

MSKQLNPAVP DQPIVLGKMG STYGIRGWLR VFSSTENAES IFDYQPWFIQ QAGKWQHVEL 
EDWKRHSQDL IIKVKGVDDR DAANLLTNCE IFVDSTQLPA LEEDDYYWKD LMGCQVVTTT 
GYELGKIIDM METGSNDVMV VKANLKDAFG MKERLVPFLH GQVIKKVDLT AQRVEVDWDP 
GF