| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_2915 |
|---|
| Symbol | miaB |
|---|
| ID | 5385014 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 3288821 |
|---|
| End bp | 3290245 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640865921 |
|---|
| Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
|---|
| Protein accession | YP_001401877 |
|---|
| Protein GI | 153950190 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0000321738 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAA AACTGCATAT CAAAACCTGG GGTTGCCAGA TGAATGAATA CGATTCATCT
AAAATGGCAG ATCTCTTGGC CAGTACCCAT GGCTACCAGT TAACCACCAT CCCGGAAGAA
GCGGATTTAC TGCTGCTAAA TACCTGTTCT ATCCGGGAAA AAGCACAGGA AAAAGTATTC
AGCCTGCTAG GGCAATGGAA ATTATTGAAA GAGAAAAACC CGCAGTTGAT TATTGGGGTC
GGTGGTTGCG TGGCGTCACA GGAAGGTGAA CAATTGCGCC AGCGCGCCCC CTGTGTCGAT
GTCATCTTCG GGCCACAAAC GCTGCATCGT TTACCGGAAA TGATTAACCA CGTGCAAGGA
ACGAATAGCC CTGTCGTGGA TATCAGTTTT CCCGAAATTG AAAAATTTGA CCGTTTGCCA
GAACCACGGG CTGAAGGCCC AACTGCGTTT GTTTCGATCA TGGAAGGCTG CAATAAATAT
TGTACATTCT GTGTCGTACC CTACACCCGA GGCGAGGAAG TCAGCCGTCC AAGCGATGAC
ATTCTTTTTG AAATCGCCCA GTTAGCCGCT CAAGGCGTAC GTGAAGTCAA CTTACTCGGC
CAGAATGTTA ACGCCTACCG CGGGGCAACC TACGATGGCG ATATCTGTAG TTTTGCCGAG
CTGTTGCGTT TGGTTGCGGC CATTGATGGT ATCGATAGGA TACGATTTAC CACCAGCCAC
CCCATTGAGT TTACTGACGA TATCATTGAT GTTTATCGCG ATACGCCTGA ATTGGTGAGC
TTCCTGCATT TGCCGGTACA AAGCGGTTCT GACCGTATTT TGACCATGAT GAAGCGTGCC
CATACCGCCC TGGAATACAA AGCCATCATC CGCAAACTGC GTCAGGCGCG CCCTGATATC
CAGATAAGTT CTGATTTTAT TGTCGGCTTC CCTGGTGAAA CCCAGCAGGA TTTTGAACAG
ACCATGAAAC TGGTCGCAGA TATTCATTTT GATACCAGCT ACAGCTTTAT TTACTCCCCG
CGTCCCGGCA CACCAGCGGC TGATTTACCC GACAATGTGT CCGAAGAGGA GAAAAAACAG
CGGCTACATA TCCTGCAACA ACGCATTAGC CAACAGGCGA TGGAAATTAG CCGTAAGATG
GTAGGGACAG TACAGCGTGT TTTGGTGGAG GGGACCTCTC GCAAAAATGT CATGGAACTG
GCCGGGCGTA CGGAAAACAA CCGCGTCGTG AACTTTGAGG GTTCACCCGA CATGATTGGT
AAATTCGTTG ATGTCGAAAT TGTTAACGTT TATGCCAGTT CACTGCGCGG CATTTTACTG
CGTACAGAAG ATCAGATGGA CCTGCGAACC CACGAGTCAC CGCAATCGGT GATTGCTCGC
ACCCGTAAAG AAAATGAAAT TGGTGTAGGT ATTTATCAGC CTTAA
|
|---|
| Protein sequence | MTKKLHIKTW GCQMNEYDSS KMADLLASTH GYQLTTIPEE ADLLLLNTCS IREKAQEKVF
SLLGQWKLLK EKNPQLIIGV GGCVASQEGE QLRQRAPCVD VIFGPQTLHR LPEMINHVQG
TNSPVVDISF PEIEKFDRLP EPRAEGPTAF VSIMEGCNKY CTFCVVPYTR GEEVSRPSDD
ILFEIAQLAA QGVREVNLLG QNVNAYRGAT YDGDICSFAE LLRLVAAIDG IDRIRFTTSH
PIEFTDDIID VYRDTPELVS FLHLPVQSGS DRILTMMKRA HTALEYKAII RKLRQARPDI
QISSDFIVGF PGETQQDFEQ TMKLVADIHF DTSYSFIYSP RPGTPAADLP DNVSEEEKKQ
RLHILQQRIS QQAMEISRKM VGTVQRVLVE GTSRKNVMEL AGRTENNRVV NFEGSPDMIG
KFVDVEIVNV YASSLRGILL RTEDQMDLRT HESPQSVIAR TRKENEIGVG IYQP
|
|---|
| |