| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_2912 |
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| Symbol | nagD |
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| ID | 5387832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 3283137 |
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| End bp | 3283889 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640865912 |
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| Product | UMP phosphatase |
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| Protein accession | YP_001401874 |
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| Protein GI | 153947843 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0647] Predicted sugar phosphatases of the HAD superfamily |
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| TIGRFAM ID | [TIGR01460] Haloacid Dehalogenase Superfamily Class (subfamily) IIA |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.00141408 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACAATCA AAAGCGTTAT TTGCGATATC GATGGGGTGT TATTACATGA CAACACCGCC
ATTAAGGGCG CCAATGACTT TTTAGCCCGT ATTCAGGATG CTGGAATGCC ATTGGTGATC
CTAACCAACT ACCCATCCCA GACGGCGCAA GATCTGACTA ACCGCTTTAT CACTGCCGGG
CTTGATGTGC CGGAAAGCGC GTTTTATACC TCAGCCATGG CAACGGCCGA CTTTTTACGC
CGTCAGGATG GCAAAAAAGC CTATGTTATT GGTGAGGGTG CTTTAGTTCA CGAACTCTAT
AAAGCTGGCT TTACCATCAC CGATATCAAT CCTGATTTTG TTATTGTCGG TGAGACGCGT
TCTTATAACT GGGACATGAT GCATAAAGCA GCCTATTTTG TTGCCAATGG TGCACGTTTT
ATTGCCACTA ACCCGGACAG CCACGGCCAC GGCTTCGCCC CTGCCTGTGG TGCTCTGTGC
GCACCTATTG AAAAAATATC AGGCCGCAAA CCGTTTTATG TCGGTAAGCC AAGTCCATGG
ATCATCCGTG CGGCGCTGAA TAAAATGCAG GCGCATTCCG AAAGCACCGT GATTGTCGGC
GATAACTTAC GTACTGATAT TTTAGCGGGC TTCCAGGCCG GTCTGGAGAC GATTCTGGTC
TTATCCGGTG TCTCAACCCT TACTGATATC GACGCCATGC CGTTCCGTCC AAGCTACGTT
TACCCCTCGG TTGCCGACAT CGATATTATC TAA
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| Protein sequence | MTIKSVICDI DGVLLHDNTA IKGANDFLAR IQDAGMPLVI LTNYPSQTAQ DLTNRFITAG
LDVPESAFYT SAMATADFLR RQDGKKAYVI GEGALVHELY KAGFTITDIN PDFVIVGETR
SYNWDMMHKA AYFVANGARF IATNPDSHGH GFAPACGALC APIEKISGRK PFYVGKPSPW
IIRAALNKMQ AHSESTVIVG DNLRTDILAG FQAGLETILV LSGVSTLTDI DAMPFRPSYV
YPSVADIDII
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