Gene YpsIP31758_2600 details

Gene Information

• Locus tag: YpsIP31758_2600
• Symbol: cydD
• ID: 5387468
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: +
• Start bp: 2955567
• End bp: 2957333
• Gene Length: 1767 bp
• Protein Length: 588 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 640865589
• Product: cysteine/glutathione ABC transporter membrane/ATP-binding component
• Protein accession: YP_001401565
• Protein GI: 153949623
• COG category: [C] Energy production and conversion; [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components
• TIGRFAM ID: [TIGR02857] thiol reductant ABC exporter, CydD subunit

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.0207033
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAAGA CAAGGCAGTA TGAGTTGATT CGTTGGCTGA AAAAACAAAG CGCCCCCGCG 
CAACGTTGGC TCCGCCTATC CATGTTACTC GGCCTGCTTA GTGGGCTATT GATTATCGCT 
CAGGCATGGT TGTTAGCCAC CCTGCTGCAA TCTCTCATTA TCGACGAATT ACCCCGTGCG 
ACACTGACCA CCGAGTTCTC CCTGCTGGCA GGCGCATTTG CCTTGCGTGC GGTGATCAGT 
TGGCTGCGTG AGCGGGTGGG GTTTATTTGT GGTATGCGTG TGCGCCAGCA GATCCGCAAA 
GTGGTGTTAG ACCGGCTAGA ACAGTTGGGG CCATCGTGGG TAAAAGGTAA ACCTGCCGGG 
AGTTGGGCAA CAATAATTCT GGAACAAATT GAAGATATGC AGGAGTACTA CTCACGCTAT 
CTACCACAAA TGTATCTGGC AGTATTTATC CCGGTCCTGA TCTTAATTGC TGTCTTCCCC 
ATCAATTGGG CCGCGGGCTT GATCTTGTTT GTCACCGCCC CCCTGATCCC CATATTCATG 
ATATTGGTCG GGATGGGAGC CGCAGATGCT AACCGGCGTA ATTTTGTCGC ATTGGCAAGA 
TTGAGCGGTA ACTTCCTTGA CCGCTTGCGT GGGCTGGATA CGCTACGTTT GTTTAACCGC 
GCCAAAGCAG AAACCGACCA AATCCGTGAC TCTTCGGAGG ATTTTCGCAG CCGAACCATG 
GAAGTGCTGC GTATGGCCTT CCTCTCTTCT GCTGTATTGG AATTTTTTGC CGCCATCTCC 
ATTGCCGTAG TTGCCGTCTA TTTTGGTTTT TCCTATTTAG GGGAACTGAA TTTTGGTAGC 
TATGGCCTCG GCGTAACGCT GTTTGCCGGT TTTTTGGTGC TAATACTGGC GCCTGAATTC 
TTCCAACCCC TTCGAGACTT AGGGACGTTC TATCACGCGA AAGCACAAGC TGTCGGTGCG 
GCTGAATCGT TAGTGACGTT TTTAAGCAGC GAGGGAGAAG CCATTGGTCA AGGCGAGAAA 
CAACTAGACG GTAAAGAGGC CATCGCCCTT GAGGCGAATG AGCTGGAGAT CCTGGCACCC 
AATGGTACCC GTTTAGCCGG GCCACTTAAT TTCTCACTGC CAGCAGGCAA ACGGGTTGCC 
ATTGTTGGTC AGAGCGGCGC GGGGAAAAGT TCGTTGCTCA ATCTATTGTT GGGTTTTTTG 
CCTTATCGCG GATCGCTAAA AGTTAATGGT ATCGAATTAC GTGAACTGGA ACCCCAAGTT 
TGGCGTAGTC AGTTAAGTTG GGTAGGCCAA AATCCACATC TACCGGAACA GACGCTGGCC 
GCCAATATTT TACTGAGACA ACCTGATGCA AGTGAGCACC AACTACAACA TGCGGTGGAG 
CGGGCTTATA TCAATGAATT TTTGAAGGAT TTACCACAAG GGCTGAATAC TGAAATTGGC 
GATCATTCGG CACGTCTTTC GGTTGGGCAA GCCCAACGAA TTGCCGTCGC CAGAGCATTA 
TTAAACCCAT GTCGTTTATT GTTGTTGGAT GAGCCTACCG CCAGTCTTGA TGCCCACAGT 
GAGCAGTTGG TGATGAAAGC GCTGGAGGAG GCCTCCCGCG CGCAGTCTAC CCTGCTGGTC 
ACTCATCAGT TGGAGGACAC CCTGGGTTAT GATCAAATCT GGGTAATGGA TAATGGCCGT 
CTAATTCAAC AAGGTGATTA CTCCACCCTT AGCCAGTCTG CTGGTTCATT TGCCAATCTG 
CTGTCTCAGC GCAATGAGGA GCTTTAA 

 

Protein sequence

MNKTRQYELI RWLKKQSAPA QRWLRLSMLL GLLSGLLIIA QAWLLATLLQ SLIIDELPRA 
TLTTEFSLLA GAFALRAVIS WLRERVGFIC GMRVRQQIRK VVLDRLEQLG PSWVKGKPAG 
SWATIILEQI EDMQEYYSRY LPQMYLAVFI PVLILIAVFP INWAAGLILF VTAPLIPIFM 
ILVGMGAADA NRRNFVALAR LSGNFLDRLR GLDTLRLFNR AKAETDQIRD SSEDFRSRTM 
EVLRMAFLSS AVLEFFAAIS IAVVAVYFGF SYLGELNFGS YGLGVTLFAG FLVLILAPEF 
FQPLRDLGTF YHAKAQAVGA AESLVTFLSS EGEAIGQGEK QLDGKEAIAL EANELEILAP 
NGTRLAGPLN FSLPAGKRVA IVGQSGAGKS SLLNLLLGFL PYRGSLKVNG IELRELEPQV 
WRSQLSWVGQ NPHLPEQTLA ANILLRQPDA SEHQLQHAVE RAYINEFLKD LPQGLNTEIG 
DHSARLSVGQ AQRIAVARAL LNPCRLLLLD EPTASLDAHS EQLVMKALEE ASRAQSTLLV 
THQLEDTLGY DQIWVMDNGR LIQQGDYSTL SQSAGSFANL LSQRNEEL