Gene YpsIP31758_2013 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_2013 
Symbolrnd 
ID5387681 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp2317001 
End bp2318122 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content48% 
IMG OID640864997 
Productribonuclease D 
Protein accessionYP_001400986 
Protein GI153949850 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID[TIGR01388] ribonuclease D 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.28628e-13 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAATTATC AGTTGATCAC GACCAATAAC GCATTGCAAC AGGTCTGCGA ACAAGCCCGG 
ACACATGCTC ACATCGCGTT GGATACAGAG TTTGTCAGAA CGCGCACTTA CTACCCTCAG
TTGGGTTTGA TTCAACTGTA TGATGGTGAA CAACTCTCAC TTATAGATCC ATTACCTATC
ACGGAATGGC AGCCTTTTCG CGCGTTACTG CAAGATCTGA ATGTGGTGAA ATATTTACAC
GCAGGCAGTG AAGATCTCGA AGTGTTTTTA AACGCTTTTG ACCAGATGCC AACCCCGATG
ATTGATACTC AGGTATTAGC GGCATTTTCT GGCCGTAGCC TATCCTGCGG CTTTGCCATG
CTGGTGGCTG AGTTTGAAGG TGTTGAGTTA GATAAAAGTG AATCACGTAC AGACTGGATT
GCCCGGCCGT TGAGTGAAAA ACAGTGCGAT TATGCGGCGG CTGATGTGTT TTATCTTTTA
CCTCTGGCGG CTAAATTAGT CGAAGCCACT GAGGCGGCAG GGCGGATGGA CGCGGCGAAA
GACGAATGTC TATTGCTGTG CCGCCGTCGG AGTGAGACGC TCGATCCTGA ACTGGCTTAC
CGTGAGATTA CCAATGCCTG GCAACTCCGT GGCCATCAAC TGGCATGTTT GCAGAAATTA
GCCGAATGGC GTTTACGTCA GGCACGGGAG CGGGATTTGG CGGTTAACTT TGTGGTTAGG
GAAGAGCACC TGTGGCAAGT TGCCCGCTAT CAACCAACAT CACTCGGTGA GTTAGATTCT
CTTGGCTTGA GTGGGCAGGA GATCCGCTAT CACGGGCGAA CATTGCTGGC ACTGGTCGCC
GAAGGGAATG CCGTCCCTGA AGATCAGCTT CCTCCCCCGA TTGCTAACTT GATTGACCAA
CCGGGGTACA AAAAAGTCTT TAAAGATATT AAAGCCTTGA TTCAATCGGT CAGTGAACGT
AGCGGATTAA GCAGTGAATT ACTGGCATCA CGTCGCCAAA TTAATCAGTT ACTCAATTGG
CACTGGAAGT TGAAGCTTTC AGATGCTCAA CCTGAATTAT TAACAGGCTG GCGTGGCGAT
TTATTGTCTT CTGAATTGCT TGAAATCTTA CAACACTATT AA
 
Protein sequence
MNYQLITTNN ALQQVCEQAR THAHIALDTE FVRTRTYYPQ LGLIQLYDGE QLSLIDPLPI 
TEWQPFRALL QDLNVVKYLH AGSEDLEVFL NAFDQMPTPM IDTQVLAAFS GRSLSCGFAM
LVAEFEGVEL DKSESRTDWI ARPLSEKQCD YAAADVFYLL PLAAKLVEAT EAAGRMDAAK
DECLLLCRRR SETLDPELAY REITNAWQLR GHQLACLQKL AEWRLRQARE RDLAVNFVVR
EEHLWQVARY QPTSLGELDS LGLSGQEIRY HGRTLLALVA EGNAVPEDQL PPPIANLIDQ
PGYKKVFKDI KALIQSVSER SGLSSELLAS RRQINQLLNW HWKLKLSDAQ PELLTGWRGD
LLSSELLEIL QHY