Gene YpsIP31758_1982 details

Gene Information

• Locus tag: YpsIP31758_1982
• Symbol: sppA
• ID: 5385598
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: +
• Start bp: 2283153
• End bp: 2285003
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640864966
• Product: protease 4
• Protein accession: YP_001400955
• Protein GI: 153948435
• COG category: [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0616] Periplasmic serine proteases (ClpP class)
• TIGRFAM ID: [TIGR00705] signal peptide peptidase SppA, 67K type; [TIGR00706] signal peptide peptidase SppA, 36K type

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.000000207213
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCACTT TGTGGCGAAT TATTGCTGGT TTTTTCAAGT GGACCTGGCG TCTACTGAAT 
TTCACCAGAG AGCTTATCCT TAATCTTTTT TTGGCACTGC TTATTTTGAT CGGTGTCGGT 
ATTTATTTTC AATTTCAAAG TAAGCCTGTG GAGCCAGTTA AAGGTGCCCT GCTGGTAAAT 
TTAAGCGGTG TGATCGTAGA TCAACCTGCT ATCAATAATA AACTACGCCA ATGGGGACGT 
GAGCTATTAG GGGCATCCAG TAACCGCCTA CAGGAAAACT CCCTGTTTGA TATTGTAGAA 
ACCATTCGAC TGGCAAAAGA CGATGACAAT ATTAACGGCC TGGTTCTGTC TCTGAGTGAC 
TTAACGGGGG CAGATCAATC CTCGCTGCAA TATATTGGTA AGGCTCTACG GGAATTTCGC 
GACACCGGCA AGAAAATTTA TGCCGTCGGC GACAGCTACA ATCAAACCCA ATACTATTTA 
GCCAGTTTTG CTAATAAGAT TTATCTCTCG CCACAAGGGG CTGTTGACCT ACACGGTTTT 
GCCAGCAATA ACCTTTATTA CAAGTCACTG CTGGAAAATC TTAAAGTCAC GACCAATATC 
TTCCGCGTAG GGACTTATAA ATCAGCAGTT GAACCGATGA TCCGTAATGA TATGTCCGCC 
GCTGCCCGTG AAGCCGATAG CCGCTGGGTG GGTGGCTTGT GGCAAAACTA CCTCACCACG 
GTCTCCGCTA ACCGCCGACT CACCCCAGAA CAACTGTTCC CTGGGGCCGC AGGGGTGATC 
AGTGGCTTAC AGGTAGCGGG TGGCTCACAA GCTAAATACG CACTGGATAG CAAACTGGTA 
GACCAATTAG CAGCCCGACC AGAAGTAGAA AGTGCACTGG TTGAAGCCTT TGGCTGGAAT 
AAAAAGACTA ATGACTTCAA CTACATCAGT ATTTATGACT ATCAGCCAAC ACCCGCACCA 
CAGCAAGGGG AACAGATAGC GGTTCTCTTC GCTAACGGAG CAATTATTGA CGGCCCGCAA 
ACCCCTGGGA ACGTGGGGGG AGATACGCTG GCAGCACAAA TTCGCCAGGC CCGTTTAGAT 
CCAAAGATTA AAGCGGTTAT CTTGCGTGTA AACAGCCCTG GCGGCAGTGT GAGCGCTTCT 
GAACTGATCC GCGCCGAATT GGCTGCATTA CGTGCTGCCC ATAAGCCATT GGTGGTATCA 
ATGGGTGGAA TGGCGGCTTC TGGTGGATAT TGGATCTCAA CACCAGCGAA CTATATCGTT 
GCCAGCCCAA GCACTCTGAC CGGCTCCATT GGTATTTTCG GTGTGATTAA CACCTTCCAA 
AATTCACTGG CAAGTATTGG TGTCCATACA GACGGTGTCG CGACATCACC ATTAGCTGAC 
GTGTCACTGA CCAAAGCATT GCCGCCTGAG TTCTCTCAGA TGATGCAAAT CAATATCGAA 
AATGGGTATA AAACCTTTAT TGATTTGGTT GCAACTTCTC GCCACAAGAC CCCTGAGCAA 
GTGGATCAAA TTGCACAAGG CCATGTGTGG ATTGGCCTCG ATGCTAAAAG TAACGGTTTA 
GTCGATCAAC TCGGCGATTT TGATGATGCC GTGAAAAAGG CGGCAGAACT GGCCAAACTG 
AAGACTTGGC AATTGAATTG GTTTGTTGAT GAGCCAAGCT TAAGCGACCT TATTTTGGGT 
CAAATGAGCG CGTCGGTGCA CGCTATGTTG CCAGCGGCTA TTCAGACGTG GTTACCCGCG 
CCTTTATCTG CTATGGCGCT TGCGGTTAAA GATCAACCTG GTTTATTCAA TACCCTGAAT 
GATCCGCAGA ATCGTTATGC TCTGTGCCTA ACCAGTGGTG ATGTCCGCTA A 

 

Protein sequence

MRTLWRIIAG FFKWTWRLLN FTRELILNLF LALLILIGVG IYFQFQSKPV EPVKGALLVN 
LSGVIVDQPA INNKLRQWGR ELLGASSNRL QENSLFDIVE TIRLAKDDDN INGLVLSLSD 
LTGADQSSLQ YIGKALREFR DTGKKIYAVG DSYNQTQYYL ASFANKIYLS PQGAVDLHGF 
ASNNLYYKSL LENLKVTTNI FRVGTYKSAV EPMIRNDMSA AAREADSRWV GGLWQNYLTT 
VSANRRLTPE QLFPGAAGVI SGLQVAGGSQ AKYALDSKLV DQLAARPEVE SALVEAFGWN 
KKTNDFNYIS IYDYQPTPAP QQGEQIAVLF ANGAIIDGPQ TPGNVGGDTL AAQIRQARLD 
PKIKAVILRV NSPGGSVSAS ELIRAELAAL RAAHKPLVVS MGGMAASGGY WISTPANYIV 
ASPSTLTGSI GIFGVINTFQ NSLASIGVHT DGVATSPLAD VSLTKALPPE FSQMMQINIE 
NGYKTFIDLV ATSRHKTPEQ VDQIAQGHVW IGLDAKSNGL VDQLGDFDDA VKKAAELAKL 
KTWQLNWFVD EPSLSDLILG QMSASVHAML PAAIQTWLPA PLSAMALAVK DQPGLFNTLN 
DPQNRYALCL TSGDVR