Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1957 |
Symbol | oppD |
ID | 5385611 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 2256762 |
End bp | 2257763 |
Gene Length | 1002 bp |
Protein Length | 333 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640864941 |
Product | oligopeptide transporter ATP-binding component |
Protein accession | YP_001400932 |
Protein GI | 153949558 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 0.473899 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGACTA TCAATAATCA CTCTACTGTT CAGTCCTCTG TATTGTTGGA GGTTAAAGAT CTGACGGTGA CCTTCGGTAC ATCAGATGGT GATGTGACTG CGGTTAACGC ACTTAATTTT GCCCTGCGAG CGGGTGAGAC ACTTGGCATT GTAGGCGAAT CTGGCTCAGG AAAATCGCAG ACTGCCTTCG CTTTGATGGG GCTGTTGGCC AGTAATGGTC GGATAGGCGG CTCTGCGAAA TTTAATGGCC GTGAAATTCT TAATCTGCCA GAAAAACAAT TGAATCGTTT GCGGGCCGAA GAGATCGCTA TGATTTTCCA AGACCCAATG ACGTCGCTGA ACCCTTATAT GCGAGTGGGT GAGCAGTTAA TGGAAGTACT GCAATTACAT AAGAAAATGA GTAAAAGCGA AGCATTTGAA GAGTCTATCC GTATGCTTGA TGCAGTAAAA ATGCCCGAAG CACGTAAACG TATGCGCATG TATCCACATG AATTTTCTGG GGGTATGCGT CAGCGGGTCA TGATTGCGAT GGCACTACTG TGCCGCCCTA AGTTATTGAT TGCTGACGAA CCGACAACGG CATTAGATGT TACTGTTCAG GCTCAAATCA TGACGTTGCT AAATGAACTT AAAAGAGAGT TCAACACCGC AATTATCATG ATCACCCATG ACTTGGGGGT CGTTGCAGGG ATTTGTGACA AAGTCTTAGT AATGTATGCG GGCCGAACAA TGGAATACGG CCAAGCACGC GATATTTTTT ATCATCCAAG CCACCCCTAT TCGATAGGTT TATTGAATGC CGTTCCTCGC CTTGATGCTG AAGGTGAATC TCTGATAACC ATACCGGGTA ATCCACCCAA TTTACTTCGC TTGCCCAAAG GGTGTCCATT CCAGCCCCGT TGCCAATATG CCATGGATCG TTGTTCAACG GCACCTGCGT TGGAACATTT TGGTGAAGGC CGCTTACGCG CCTGTTATAA GCCGGTAGGG GAATTAGTAT GA
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Protein sequence | MTTINNHSTV QSSVLLEVKD LTVTFGTSDG DVTAVNALNF ALRAGETLGI VGESGSGKSQ TAFALMGLLA SNGRIGGSAK FNGREILNLP EKQLNRLRAE EIAMIFQDPM TSLNPYMRVG EQLMEVLQLH KKMSKSEAFE ESIRMLDAVK MPEARKRMRM YPHEFSGGMR QRVMIAMALL CRPKLLIADE PTTALDVTVQ AQIMTLLNEL KREFNTAIIM ITHDLGVVAG ICDKVLVMYA GRTMEYGQAR DIFYHPSHPY SIGLLNAVPR LDAEGESLIT IPGNPPNLLR LPKGCPFQPR CQYAMDRCST APALEHFGEG RLRACYKPVG ELV
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