Gene YpsIP31758_1940 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_1940 
Symbol 
ID5387314 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand- 
Start bp2243574 
End bp2244209 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content46% 
IMG OID640864924 
Productouter membrane protein W 
Protein accessionYP_001400915 
Protein GI153948199 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3047] Outer membrane protein W 
TIGRFAM ID[TIGR03304] outer membrane insertion C-terminal signal 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value0.218273 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAA TCACTTTGGC ACTGCTCGCC GTGGCCTCGT TAGTACCTAC AGCAGCAAGT 
GCACATGAAG CTGGCGATTA TATTTTCCGA GCAGGGACGG CAACCGTCAG ACCTAATGCC 
GGGTCTGATG ATGTGTTAGG TAACGGTTCC TTCAAAGTCG ATAACAATAC TCAGTTGGGG 
CTGACCTTCA GTTACCTAAT TACCGACAAT ATCGGTGTTG AATTGCTGGC AGCAACGCCA 
TTCAACCATA AAGTGGGGCT GGCAGGGGTA GGGACGATTG CGGATGTTAA ACAACTGCCG 
CCAACATTAA TGGCGCAGTA CTATTTCCGT GATAAACAAG ATAAATTGCG TCCATACCTA 
GGTATCGGTC TGAACTACAC CAAATTCTTT GACGAAAAAT TCAACGCGAC AGGCTCAGAT 
ATCGGTCTGA CGAATTTAAG TGTTAAAGAT TCATGGGGTG TTGCAGGGCA AGCTGGCATG 
GATTATATGG TCAGTGAAAA CTGGATGCTG AACATGTCAG TCTGGTGGAT GAACATTGAA 
TCCGACGTGA AATTTAATTT GGCAGGTGAA GAGCACAGCA TCAATACCCG TTTGGACCCA 
TGGGTATTTA TGTTTGGCGC AGGTTATCGT TTTTAA
 
Protein sequence
MKKITLALLA VASLVPTAAS AHEAGDYIFR AGTATVRPNA GSDDVLGNGS FKVDNNTQLG 
LTFSYLITDN IGVELLAATP FNHKVGLAGV GTIADVKQLP PTLMAQYYFR DKQDKLRPYL 
GIGLNYTKFF DEKFNATGSD IGLTNLSVKD SWGVAGQAGM DYMVSENWML NMSVWWMNIE 
SDVKFNLAGE EHSINTRLDP WVFMFGAGYR F