Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1677 |
Symbol | |
ID | 5387118 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 1948241 |
End bp | 1950853 |
Gene Length | 2613 bp |
Protein Length | 870 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640864658 |
Product | fimbrial usher protein |
Protein accession | YP_001400654 |
Protein GI | 153949510 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTAGTG CTTTCATATT TTTTCAAAAA AACGAGTGCC TAAAATATTT ACCGGCATTC TCTTTCGCTA TTTGTGGTAT TGGTGGCATG TTATATATTC CGTCATCTGC CGCCGAGAAT TCTGAATACG TTGAATTTAG TGACGCCTTC CTCCGTTTTC CCGTTGATGC CACCCGCTAC AGTGAGGGTA ATCCTGTTTC CCCCGGTGAG CGTCAGGTTG ATATCTATTT AAATGATCAA TGGATTGGTC GTCAGGAAAT GCGTTTTGCC TTGCCGTCGC CAGAATCGAA AGTTGCCACC CCCTGTTTTG ACGTAAAACT CTTTGATGAG TTGGGGGTTG ATACGGCGAA GTTATCTTCC GATACCGTGA AATTGCTCGA AAGTCGCGGG GCATGCTCTC CGTTGAGTCG TTTGCTGGAA GGTGGAAATG CTATTTTTGA CGACAATCAG CAACGCTTGG ATATTCAGGT TCCTCAAGCT TATCTGATCC GCCAGGCTCG CGGTTATGTG CATCCTAAAT ATTGGGATGA TGGCGTGACA GCGGCCACCT TGAAATATGA CTATACCGGT TACCGCAGTA ACCAGAATGA TATCGGTAGC CAGACTTATC AATATCTGGG GCTCTTGGGC GGGCTTAACT GGCAAAGCTG GCGTCTATAT TACCGCAGTG CATTGAATCG AAGTGATAGC CAAGGCTTTG ATTATCAGAA CCTGGCCACT TATGTTGAAC GGGCCGTTCC CTCGCTATAC AGCAAAATGA CTATTGGTGA TTCAAACACG GATGGTCAGG TGTTCGACAG CCTTAGCTAT CGCGGCATTG AGTTGACCTC AGATGACCGG ATGTATGCGG ATTCTCAGCG GGGTTATGCG CCTGTGGTAC GGGGTGTTGC TCGAACTAAC GCCCGCGTCG TGGTGCGTCA ACAGGGGCGG CCTATTTATG AAACGACGGT ACCCCCAGGG CCTTTTGTCA TTGACGACCT CTACCCGACC GGTCAGGGGG GCAATCTCAA TGTCACCATT ACCGAAGCGG ATGGCAGCGA ACAGACATTT ATCGTTCCTT TTGCCTCGAT AGCGGAGTTG CTGCGACCGG GAACCACGCG TTACTCATTG ATGGCCGGTG AGTATCGTGA CAATTCGATG GTAGATAAAC CGGTTCTCTT TATGGGAACG GTGCGTCATG GGTTATCCAA TTTACTCACC GGTAACGGCG GGATGGTTGC GGCTGAAGGC TATTTATCAG CCTCTGCCGG GTTGGCATTT AACACACCGG TTGGTGCCGT GGCATTTAAT GTGACGCAAG CACAAACCCG TCTGCCTAAT AAAGATAATC AACGTGGGCA AAGTATTGGT ATGACCTATG CCAAATCCTT GCCGGAAACC AATACCAACT TGACCATCGC CAGTTATCAC TATTCCAGTA ACGGTTTTTA TACACCAGCA GAAGCTATGC GAATGCGTGA TTATTTACAG CATGGTGAAG TCAATAATAC GCAGATTGAT TCAAGTTGGC CGAATGGCAG TGATCGCTAC GATGATAGTT TTAAGTATCG TCGCCGCAAT CAGGCGCAAG TGAGTATCGC TCAGGGCTTA CCTGATGGCT ATGGCTCGTT CTACGCAAAT GCCAATGTGC AGGATTACTG GGATGGGCGT AACCGCGATA TGAATTTTCA ATTCGGCTAC ACGAATAGCT ATAAATCGCT GAGTTATAAC GTGGCGCTTA ATCGCTTGCG TGATATACCT AGCGGCGATT GGGACAACCA ATTAAGTGTT TCCCTTTCGA TTCCTCTGGG GACACAGGCT GGTGCACCAC GTTTGAGCTC CAGTTATTCC AATACTCGTG GTAGCAGTGC AATACAAACC GGGGTTTCCG GCTCTGCGGG TGAGGATAAT CAATTTAGCT ATGGCGTCTC TGCAGCGAAT AACCGTAGCG ATGAAAATGG CAGTTATAAC ACCCTGGGTG CGAATGGCAG TTGGCAGGCA CCTTACGCCA CGGTGGGCGG TAGTTATTCG AAGAGTAACA GCTATGATCA AGCCAGTGCC AGCTTGTCAG GGGGGGTAGT GGCTTATCGT GGTGGGGTGA TATTGGCCCC TGCACTGGGT GATACCGTCG GTATTATTGA GGCTCCAGAT GCTGCGGGAG CGCGTGTCGG CAGCTACTCC AGTATGTATC TTGATCGTCG TGGGCGTGCG ATATTGCCTT ATTTAAGTCC GTATCGGCAG AATGAGGTTG AATTAGATCC GAAAGGGCTA TCTGCAGATG TTGAGTTTAA AAGTACTAGC CAAAAAGTTG CGCCAACCGC AGGTGCTGTT GCATTGGTAA CATTCGAGAC CTCAACCGGT TATTCGGTTT TAGTCAGGGG GCATCTGGCA GATAACACCC CCTTGCCGTT TGGGGCGGAA GTAAAAGATG GCGGAGGGAC CCGCGTCGGC TTTATTGCTC AGGGCGGTCA GGCAATGGTC CGAGTGAATC AACAAGCCGG TAATCTGCGC GTGATATGGG GTGATGGCAT CGGTGAGAGT TGCAGTTTTG ACTATAAATT GCCGGAAGGT AACCTAGTAA AAGGTCATCT GGTCAAAGGT GACTACCGGC GCTTAGAGGT GATATGCAAA TGA
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Protein sequence | MLSAFIFFQK NECLKYLPAF SFAICGIGGM LYIPSSAAEN SEYVEFSDAF LRFPVDATRY SEGNPVSPGE RQVDIYLNDQ WIGRQEMRFA LPSPESKVAT PCFDVKLFDE LGVDTAKLSS DTVKLLESRG ACSPLSRLLE GGNAIFDDNQ QRLDIQVPQA YLIRQARGYV HPKYWDDGVT AATLKYDYTG YRSNQNDIGS QTYQYLGLLG GLNWQSWRLY YRSALNRSDS QGFDYQNLAT YVERAVPSLY SKMTIGDSNT DGQVFDSLSY RGIELTSDDR MYADSQRGYA PVVRGVARTN ARVVVRQQGR PIYETTVPPG PFVIDDLYPT GQGGNLNVTI TEADGSEQTF IVPFASIAEL LRPGTTRYSL MAGEYRDNSM VDKPVLFMGT VRHGLSNLLT GNGGMVAAEG YLSASAGLAF NTPVGAVAFN VTQAQTRLPN KDNQRGQSIG MTYAKSLPET NTNLTIASYH YSSNGFYTPA EAMRMRDYLQ HGEVNNTQID SSWPNGSDRY DDSFKYRRRN QAQVSIAQGL PDGYGSFYAN ANVQDYWDGR NRDMNFQFGY TNSYKSLSYN VALNRLRDIP SGDWDNQLSV SLSIPLGTQA GAPRLSSSYS NTRGSSAIQT GVSGSAGEDN QFSYGVSAAN NRSDENGSYN TLGANGSWQA PYATVGGSYS KSNSYDQASA SLSGGVVAYR GGVILAPALG DTVGIIEAPD AAGARVGSYS SMYLDRRGRA ILPYLSPYRQ NEVELDPKGL SADVEFKSTS QKVAPTAGAV ALVTFETSTG YSVLVRGHLA DNTPLPFGAE VKDGGGTRVG FIAQGGQAMV RVNQQAGNLR VIWGDGIGES CSFDYKLPEG NLVKGHLVKG DYRRLEVICK
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