| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1664 |
|---|
| Symbol | |
|---|
| ID | 5386978 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 1933567 |
|---|
| End bp | 1934319 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640864645 |
|---|
| Product | pilus assembly chaperone |
|---|
| Protein accession | YP_001400641 |
|---|
| Protein GI | 153949830 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3121] P pilus assembly protein, chaperone PapD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 0.74351 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAT ATCACTTATT ATCTAAATTG ATATTATCCT TTATTTTGCT ACCCATCGCC
CCTCTACATG CTGCTGTTTC CGTATTAATT TGGCCCATTG ACCCAGTCAT TAACGATGAC
GAAAATGCCA CAGCATTATG GCTGGAAAAT AAAGATAGCC AACCAACTTA TATGCAAATA
CGGGTACTGA GTTGGCGACA GGTTAATGGT CTGGACGACT ACAACGCTCA GACTGCCATT
ATTGCCAGCC CCCCCGTTGC CAATATTCAA CCAGGCAAGC GCCAACTGAT TCGCTTAGTT
AAGAATGCAC AAGTTCCTGC GGGAAAAGAG CTGGCCTACC GGATATTAAT CGATGAGATC
CCCCGTCAGG AACCTAATGA TAAAAATAAC CCGTCATCAA CACAATTGGG TCTGACATTT
CAAATGCGCT ATTCCGTGCC CCTATTTGTT TATGGGAATG GTACGCAGAT AGCACCCGAG
GCGACACAAC CGACTGATAT TGCACAACCT ACGCTCAGCT ATATATTGAA TCGGCAACAG
GGGAAGCAAT GGCTGACGAT CCGCAATCAA AGTGAAATTC ATGCACGTAT TTCTCAGGTC
ACACTCAACG GCCAGACGGT TAACAACGGC TTATTGGGCT ATGTATTAGC GAGATCACAG
ATGAGCTTTC CCATCAGCTT AGCCGCCAGA AAAGGTGAGT TGGCGGCCAT TATCAATAGC
AACACCAAAC CAGTAACTAT TCCATACCAG TAA
|
|---|
| Protein sequence | MIKYHLLSKL ILSFILLPIA PLHAAVSVLI WPIDPVINDD ENATALWLEN KDSQPTYMQI
RVLSWRQVNG LDDYNAQTAI IASPPVANIQ PGKRQLIRLV KNAQVPAGKE LAYRILIDEI
PRQEPNDKNN PSSTQLGLTF QMRYSVPLFV YGNGTQIAPE ATQPTDIAQP TLSYILNRQQ
GKQWLTIRNQ SEIHARISQV TLNGQTVNNG LLGYVLARSQ MSFPISLAAR KGELAAIINS
NTKPVTIPYQ
|
|---|
| |