Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1663 |
Symbol | |
ID | 5384746 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 1931050 |
End bp | 1933497 |
Gene Length | 2448 bp |
Protein Length | 815 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640864644 |
Product | fimbrial usher protein |
Protein accession | YP_001400640 |
Protein GI | 153947879 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTATCA GATTCCGGCT ACCGCCATTA TCGGTACTGA TATATGGCTC AATATTGTTA CCGTCACTGA TACCCTTGAC TATTTTAGGA GGGAGCCTCC CTCCGCCCTC GACATCAACA ACGATGCCTG ATACTACGTT ATATCTTGAA CTCGTGGTCA ATGACCGTAA CTTTGGGAAT GCTGTACCTA TTAGTTACCG CAACAACCGT TATTACCTTT CTCAATCACA GCTAAGAGCG ATTGGGCTTC CTATATCAGA GCCACTGGCA CCCGAGATTG CCATTGATAA TATGGCGGGC GTGAACGTTA AATATGATGG AGAGAACCAA CGCCTATTAA TCAATGTTCC CAGCGAGTGG CTACCAAAGC AACAAATCGA GGTTACCGAA CAAGATGATT TCAATCTTGC GCAAAGTAGT TTGGGGGCTT TATTCAATTA CGATATCTAT GCCACACAAG GTTACCCGTA CTCATCTTTA ACTCATTTTT CAGCATGGAC AGAACAGCGC ATTTTTGATC GTTTTGGCTT GCTCAGTAAT ACCGGCGTTT ATCGCACCCA CTTCCCAAGT AATAACAACA CAGATGATGC GAAAGGCTAT ATTCGTTTTG ATACCCAGTG GCAGAAGAAT GACGAAGAAC ATCTGCTGCG TTATAGCGCA GGTGACCTCA TTACCGGTGC TTTGCCATGG TGCAGTGCGA TACGTCTTGG CGGCATTCAG ATAGCACGGC ATTTTGCTAT TCGGCCCGAT CTCATAACCT ACCCATTACC ACAATTTTCT GGTCAGGCCG CAGTCCCCAG CACCGTTGAT CTCTACATTG ATAACTTCAG GACACAATCG GCCAATATCA ACCCAGGCCC TTTTGTCATC AATAATGCAC CGCGAATCAA TGGTGCAGGC CAAGCGACTA TCGTCACAAC CGATGCCCTT GGCAGGCAAA TCAGCACATC TGTACCCTTT TACGTTGCCA GTACACTGCT AAAACCCGGA GTGTGGGATT TCAGTCTCTC GGGGGGTGCC CTACGTCGTA ATTATGCGAT TCGCTCAGCA GATTACGGTG AAATGGTTGC CAGTGGTGTC GTTCGTTACG GCACAACACC TTGGTTGACA CTGGAGGGCC GGGGAGACAT CGCCAAAGAA ATGCATGTAA TTGGGGGTGG CGTTAATTTT CGCATGGGGT TATTGGGTGT CCTAAATAGT GCATACAGTA TAAGCAACAC ATCGAACGGC GCTTTTAACA ATGTGGCTGA ACCGCTAAAT ACCAATAATG CCACGCCGAA TAGATTACCG TCCCCAGCAG CGTCACGCCG TGGACGTGGC AACCAGCGTT CATTAGGCTA TAGCTACAGT AATGCATTCT TTAATTTAAA TGCTCAACAT ATTATCTCTA GTGATGAATA CAGTGACCTT GCCAATTATA AAACGCCTTC TCTCTTAAGC CGACGCATGA CTCAACTCAC GGGAAGTCTC AGCCTCGGTA GTTACGGCAC CGTGGGATCG GGTTACTTTG ATGTCAGGGA TGCTCTTGGC GAACAAACCC GGCTCATTAA TATCAGCTAC AGCACCTCAC TGTTACGCAA TAGCAACTTT TATAGCGCAC TAAACCGTGA GCTGGGCCGT AAAGGTTACA ATGTACAACT GGTCTGGAGC ATTCCGTTAG GCCCGCGGGG ATCAAGCAGC ATCAGTGCAA CCCGCACGAA TGATAACCAA TGGATTCAAC AACTGAATTA TAGCCGTTCA GCGCCCTCGA ATGGGGGATT GGGCTGGAAC CTCGCTTATG CCAACAGCAC GAATAACAAT AATCAATACC AACAGGCAGA CATTGTTTGG CGTACTTCAA TGATGGAGAG TCGCATGGGC CTATATGGTA ACAGTAATAA CTACAACTAT TGGGGGGGAT TAACCGGTTC ATTAGTGGTG ATGAATAGGA GTGTCTATGC CAGCAATATG ATTAACGATG CTTTTGCTTT GGTATCGACC AATGGTTTTA GTAATATTCC GGTTAGTTAC GAAAATCAAC TTATTGGCAC AACTAATGCC AAGGGTTATT TGCTGATCCC GACAGTCGCC TCATATTATC AGGCAAAATT CCAGATTGAC CCAATGAATT TACCGGCAGA TGTCATGCTA CCCAATGTTG AACGGCGGTT AGCCATTGGT GAACGCAGTG GCTATTTAAT TAATTTCCCC ATTAAGCGAA TTTCCGCAGT GAATATTAGA ATTACAGACG CATCAGGCCA AGACTTACCG AAAGGCAGTG CAATATATAC TACCGGTAAC ATCCCCATAA GTTATGTCGG TTGGGATGGC ATGGTATATA TCGAGCAAGT GGCACAATTA AATAACCTTA GGATTATACG TGCCGATAAT GGCACACAGT GCTACAGCCA GTTCAAACTA AAGACGACGG AAGGTATACA GGATGCTGGC ACCACAGTAT GCCGATAG
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Protein sequence | MIIRFRLPPL SVLIYGSILL PSLIPLTILG GSLPPPSTST TMPDTTLYLE LVVNDRNFGN AVPISYRNNR YYLSQSQLRA IGLPISEPLA PEIAIDNMAG VNVKYDGENQ RLLINVPSEW LPKQQIEVTE QDDFNLAQSS LGALFNYDIY ATQGYPYSSL THFSAWTEQR IFDRFGLLSN TGVYRTHFPS NNNTDDAKGY IRFDTQWQKN DEEHLLRYSA GDLITGALPW CSAIRLGGIQ IARHFAIRPD LITYPLPQFS GQAAVPSTVD LYIDNFRTQS ANINPGPFVI NNAPRINGAG QATIVTTDAL GRQISTSVPF YVASTLLKPG VWDFSLSGGA LRRNYAIRSA DYGEMVASGV VRYGTTPWLT LEGRGDIAKE MHVIGGGVNF RMGLLGVLNS AYSISNTSNG AFNNVAEPLN TNNATPNRLP SPAASRRGRG NQRSLGYSYS NAFFNLNAQH IISSDEYSDL ANYKTPSLLS RRMTQLTGSL SLGSYGTVGS GYFDVRDALG EQTRLINISY STSLLRNSNF YSALNRELGR KGYNVQLVWS IPLGPRGSSS ISATRTNDNQ WIQQLNYSRS APSNGGLGWN LAYANSTNNN NQYQQADIVW RTSMMESRMG LYGNSNNYNY WGGLTGSLVV MNRSVYASNM INDAFALVST NGFSNIPVSY ENQLIGTTNA KGYLLIPTVA SYYQAKFQID PMNLPADVML PNVERRLAIG ERSGYLINFP IKRISAVNIR ITDASGQDLP KGSAIYTTGN IPISYVGWDG MVYIEQVAQL NNLRIIRADN GTQCYSQFKL KTTEGIQDAG TTVCR
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