Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1598 |
Symbol | mfd |
ID | 5387972 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 1854481 |
End bp | 1857927 |
Gene Length | 3447 bp |
Protein Length | 1148 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640864579 |
Product | transcription-repair coupling factor |
Protein accession | YP_001400575 |
Protein GI | 153948693 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000000129728 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCCAAC AATATCGTTA TTCATTGCCT GAACGACGTG GTGATACCCG TCAGTTAGGC CAGTTGACCG GATCAGCCTG TGCGGTCGAA TGTGCCGAAA TCATTGAACG CCATGATGGC CCGGTAATGC TGATTACCCC CGATATGCAA ACGGCCTTGC GCTTGCGTGA TGAGATCCAG CAATTCTCGC CGCAACCCGT AAGTACCCTC TCCGATTGGG AAACGCTGCC TTACGATAGC TTCTCGCCAC ATCAAGATAT TATTTCGGCC CGCCTCTCTT GTTTGTATCA TCTTCCGGCA ATGAAACGCG GTGTCATTAT TCTCCCAATT AATACCCTGA TGCAACGAGT GTGCCCACAC GAATTTCTAC ATGGCCACGC TTTGGTGATG AAAAAAGGCC AGCACTTGTC ACGGGATAAG TTACGCGCCC AACTTGAGCA AGCGGGCTAT CGCAGTGTTG AACAGGTCAT GGAGCACGGT GAGTTTGCGA CGCGAGGTGC GTTGCTGGAC TTATACCCAA TGGGGAGCAA TGAACCGTAT CGGATTGATT TTTTTGATGA TGATATTGAT AGCCTGCGGG TATTTGACGT TGATTCGCAA CGCACACTCG TCGAAGTTGA GCAAATAAAC TTACTGCCAG CACATGAGTT CCCAATAGAT AAAGCGGCGA TTGAATTATT CCGTAGCCAA TGGCGTGAAC AGTTTGAAGT CCGTCGCGAC AACGAACATA TTTATCAGCA AGTGAGTAAA GGCATCTGGC CTGCGGGTAT CGAGTATTGG CAGCCGCTGT TTTTCAGCCA GCAATTACCG ACATTGTTTA GCTATCTGCC TGAAAATACC TTATTGGTAA ACACCGGAGA TCTGGAAAGC TCGGCTGAAC GCTTCTGGCA GGACGTTAAC CAACGCTTCG AAAGCCGCCG TGTTGACCCA ATGCGCCCAC TGTTGGCCCC CGAGAGCTTG TGGCTTCGGG TTGATGCGCT GTTTAATGAA TTAAAAGAGT GGCCGCGTGT TCAGCTTAAA ACAGAGGCGC AGCCCGCCAA AGCCGCGAAT ACCAATTTAT GTTATCAACC GCTGCCCGAT TTATCCGTTC AGGCACAACA AAAAGCGCCT CTTGATAATC TGCGTCGCTT TATTGAATCG TTTCATGGCA GTGTGGTGTT CTCGGTTGAA AGTGAAGGCC GCCGTGAAAC CTTACAAGAC CTGCTGGCAC GGATAAAACT CAGCCCAACA CTGATCACTA CGCTGTCTCA GGCGGCTAAC CCCGGCCATT ATCTGATGGT TGGGGCCTCG GAACGTGGCT TCCTCGATAC TGACAAACAA CTGGCGCTGA TTTGTGAAAG CGACCTACTC GGTGAGCGTG TCAGCCGTCG CCGGCAAGAT AACCGGCGGA CCATCAACAC CGATACGTTG ATCCGTAATT TGGCAGAACT CCGCCCCGGC CAGCCGGTAG TCCATCTGGA ACACGGTGTC GGCCGCTATC TGGGACTAAC CACCCTTGAA GCGGGTGGGA TAAAGGCTGA ATACCTGATA TTGACTTACG CCGGTGAAGA TAAACTGTAT GTCCCCGTGT CATCATTGCA TCTCATTAGC CGCTATTCAG GGGGTGCGGA CGATAACGCC CCGTTGCATA GGTTAGGCAG CGATGTCTGG AGCCGGGCAC GGCAAAAAGC CGCCGAGAAA GTGCGGGATG TTGCTGCTGA ACTGCTGGAT ATCTATGCCC AGAGGGCGGT TAAATCTGGC TTTAAATTTA AGCATGACCG TGAGCAATAC CAGCTGTTCT GCCAAAGCTT CCCGTTTGAA ACCACGCCAG ATCAAGAGCA GGCGATCAAC GCGGTGCTCA GTGATATGTG CCAACCGTTA GCCATGGACC GCTTGGTTTG TGGTGATGTG GGCTTTGGTA AAACGGAAGT GGCGATGCGG GCCGCATTTC TGGCCGTTAC CAATAATAAA CAAGTGGCGG TGTTGGTACC CACCACCCTG CTGGCTCAAC AGCATTTTGA TAATTTCCGT GACCGCTTTG CCACTTGGCC GGTACGGATT GAGATGCTAT CCCGTTTTCG CAGTGCCAAA GAGCAGCAAG TCATTCTGGA ACAAGCCGCT GAAGGCAAAA TCGATATCCT TATCGGTACC CATAAATTGC TGCAAAGCGA TCTGCATTGG CACGATCTCG GCCTGCTGAT TGTGGATGAA GAACACCGCT TCGGCGTGCG TCATAAAGAG CGGATCAAAG CGATGCGGGC TGATGTTGAT ATCCTGACCC TGACGGCCAC GCCAATCCCA CGCACACTGA ATATGGCGAT GAGTGGCATG CGTGACTTAT CAATTATCGC CACCCCTCCG GCACGGCGTC TGGCGGTAAA AACCTTTGTC CGCGAATACG ATAGCCTGGT GATCCGTGAA GCCATATTGC GTGAAATCCT GCGCGGTGGG CAAGTCTATT ACCTGTACAA CGATGTGGAG AATATCGAAA AAGTCACGCA GAAACTGGCT GAATTAGTCC CTGAGGCTCG GATAGCCATC GGCCATGGTC AAATGCGTGA ACGGGATCTG GAACGGGTGA TGAATGATTT CCACCATCAA CGCTTCAATG TGCTGGTCTG TACCACCATT ATTGAAACCG GTATTGATAT TCCCAGCGCC AATACCATTA TTATTGAGCG AGCGGATCAC TTGGGTCTGG CGCAGTTGCA CCAGCTCAGA GGCCGGGTCG GGCGCTCTCA CCATCAGGCT TATGCCTACT TGCTGACCCC CAATCCAAAA GCCATGAGCA CCGATGCGAA GAAACGGCTG GAAGCCATTG CGTCACTGGA AGATCTCGGT GCAGGTTTTG CATTGGCGAC ACATGATTTG GAAATCCGTG GTGCCGGGGA GCTATTGGGC GAGGACCAAA GCGGCCAGAT GACCACGATT GGCTTCTCGT TGTATATGGA GTTACTGGAA AGTGCCGTAG ATGCGCTAAA AGAGGGCCGC GAGCCTTCAT TAGAAGACCT GACCAGCAAC CAAACCGAAA TAGAAATGCG CATGCCGGTG CTGCTGCCAG AGGATTTCAT TTCAGATGTG AATATCAGGC TGTCGTTCTA TAAACGTATC GCCAGTGCGC GCAACGAAAC CGAGCTGGAT GAGTTAAAAG TTGAGCTAAT CGATCGCTTT GGCAAGTTAC CCGACCCCGC CCGCTATTTA TTGCATACCG CCGAATTGCG TCAACAAGCC CAGAAACTGG GTATCAAACG TATTGAAGGC AATGAGCGTG GCGGTTTCAT TGAGTTTGGC GAGAATAATA AAGTGGATCC GGTGTATTTG ATTGGGCTGT TACAACGGCA ACCACAGATT TACCGTTTGG AAGGGCCAAC CAAATTGAAG TTTATGCAAG ATTTGAGTGA TCGGGCGCAA CGGTTGAAAT TTATTACGGA GTTACTGGCG GCATTTGCAC AACATCGCAT TGCCTAG
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Protein sequence | MSQQYRYSLP ERRGDTRQLG QLTGSACAVE CAEIIERHDG PVMLITPDMQ TALRLRDEIQ QFSPQPVSTL SDWETLPYDS FSPHQDIISA RLSCLYHLPA MKRGVIILPI NTLMQRVCPH EFLHGHALVM KKGQHLSRDK LRAQLEQAGY RSVEQVMEHG EFATRGALLD LYPMGSNEPY RIDFFDDDID SLRVFDVDSQ RTLVEVEQIN LLPAHEFPID KAAIELFRSQ WREQFEVRRD NEHIYQQVSK GIWPAGIEYW QPLFFSQQLP TLFSYLPENT LLVNTGDLES SAERFWQDVN QRFESRRVDP MRPLLAPESL WLRVDALFNE LKEWPRVQLK TEAQPAKAAN TNLCYQPLPD LSVQAQQKAP LDNLRRFIES FHGSVVFSVE SEGRRETLQD LLARIKLSPT LITTLSQAAN PGHYLMVGAS ERGFLDTDKQ LALICESDLL GERVSRRRQD NRRTINTDTL IRNLAELRPG QPVVHLEHGV GRYLGLTTLE AGGIKAEYLI LTYAGEDKLY VPVSSLHLIS RYSGGADDNA PLHRLGSDVW SRARQKAAEK VRDVAAELLD IYAQRAVKSG FKFKHDREQY QLFCQSFPFE TTPDQEQAIN AVLSDMCQPL AMDRLVCGDV GFGKTEVAMR AAFLAVTNNK QVAVLVPTTL LAQQHFDNFR DRFATWPVRI EMLSRFRSAK EQQVILEQAA EGKIDILIGT HKLLQSDLHW HDLGLLIVDE EHRFGVRHKE RIKAMRADVD ILTLTATPIP RTLNMAMSGM RDLSIIATPP ARRLAVKTFV REYDSLVIRE AILREILRGG QVYYLYNDVE NIEKVTQKLA ELVPEARIAI GHGQMRERDL ERVMNDFHHQ RFNVLVCTTI IETGIDIPSA NTIIIERADH LGLAQLHQLR GRVGRSHHQA YAYLLTPNPK AMSTDAKKRL EAIASLEDLG AGFALATHDL EIRGAGELLG EDQSGQMTTI GFSLYMELLE SAVDALKEGR EPSLEDLTSN QTEIEMRMPV LLPEDFISDV NIRLSFYKRI ASARNETELD ELKVELIDRF GKLPDPARYL LHTAELRQQA QKLGIKRIEG NERGGFIEFG ENNKVDPVYL IGLLQRQPQI YRLEGPTKLK FMQDLSDRAQ RLKFITELLA AFAQHRIA
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