Gene YpsIP31758_1598 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_1598 
Symbolmfd 
ID5387972 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp1854481 
End bp1857927 
Gene Length3447 bp 
Protein Length1148 aa 
Translation table11 
GC content51% 
IMG OID640864579 
Producttranscription-repair coupling factor 
Protein accessionYP_001400575 
Protein GI153948693 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1197] Transcription-repair coupling factor (superfamily II helicase) 
TIGRFAM ID[TIGR00580] transcription-repair coupling factor (mfd) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000129728 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCCAAC AATATCGTTA TTCATTGCCT GAACGACGTG GTGATACCCG TCAGTTAGGC 
CAGTTGACCG GATCAGCCTG TGCGGTCGAA TGTGCCGAAA TCATTGAACG CCATGATGGC
CCGGTAATGC TGATTACCCC CGATATGCAA ACGGCCTTGC GCTTGCGTGA TGAGATCCAG
CAATTCTCGC CGCAACCCGT AAGTACCCTC TCCGATTGGG AAACGCTGCC TTACGATAGC
TTCTCGCCAC ATCAAGATAT TATTTCGGCC CGCCTCTCTT GTTTGTATCA TCTTCCGGCA
ATGAAACGCG GTGTCATTAT TCTCCCAATT AATACCCTGA TGCAACGAGT GTGCCCACAC
GAATTTCTAC ATGGCCACGC TTTGGTGATG AAAAAAGGCC AGCACTTGTC ACGGGATAAG
TTACGCGCCC AACTTGAGCA AGCGGGCTAT CGCAGTGTTG AACAGGTCAT GGAGCACGGT
GAGTTTGCGA CGCGAGGTGC GTTGCTGGAC TTATACCCAA TGGGGAGCAA TGAACCGTAT
CGGATTGATT TTTTTGATGA TGATATTGAT AGCCTGCGGG TATTTGACGT TGATTCGCAA
CGCACACTCG TCGAAGTTGA GCAAATAAAC TTACTGCCAG CACATGAGTT CCCAATAGAT
AAAGCGGCGA TTGAATTATT CCGTAGCCAA TGGCGTGAAC AGTTTGAAGT CCGTCGCGAC
AACGAACATA TTTATCAGCA AGTGAGTAAA GGCATCTGGC CTGCGGGTAT CGAGTATTGG
CAGCCGCTGT TTTTCAGCCA GCAATTACCG ACATTGTTTA GCTATCTGCC TGAAAATACC
TTATTGGTAA ACACCGGAGA TCTGGAAAGC TCGGCTGAAC GCTTCTGGCA GGACGTTAAC
CAACGCTTCG AAAGCCGCCG TGTTGACCCA ATGCGCCCAC TGTTGGCCCC CGAGAGCTTG
TGGCTTCGGG TTGATGCGCT GTTTAATGAA TTAAAAGAGT GGCCGCGTGT TCAGCTTAAA
ACAGAGGCGC AGCCCGCCAA AGCCGCGAAT ACCAATTTAT GTTATCAACC GCTGCCCGAT
TTATCCGTTC AGGCACAACA AAAAGCGCCT CTTGATAATC TGCGTCGCTT TATTGAATCG
TTTCATGGCA GTGTGGTGTT CTCGGTTGAA AGTGAAGGCC GCCGTGAAAC CTTACAAGAC
CTGCTGGCAC GGATAAAACT CAGCCCAACA CTGATCACTA CGCTGTCTCA GGCGGCTAAC
CCCGGCCATT ATCTGATGGT TGGGGCCTCG GAACGTGGCT TCCTCGATAC TGACAAACAA
CTGGCGCTGA TTTGTGAAAG CGACCTACTC GGTGAGCGTG TCAGCCGTCG CCGGCAAGAT
AACCGGCGGA CCATCAACAC CGATACGTTG ATCCGTAATT TGGCAGAACT CCGCCCCGGC
CAGCCGGTAG TCCATCTGGA ACACGGTGTC GGCCGCTATC TGGGACTAAC CACCCTTGAA
GCGGGTGGGA TAAAGGCTGA ATACCTGATA TTGACTTACG CCGGTGAAGA TAAACTGTAT
GTCCCCGTGT CATCATTGCA TCTCATTAGC CGCTATTCAG GGGGTGCGGA CGATAACGCC
CCGTTGCATA GGTTAGGCAG CGATGTCTGG AGCCGGGCAC GGCAAAAAGC CGCCGAGAAA
GTGCGGGATG TTGCTGCTGA ACTGCTGGAT ATCTATGCCC AGAGGGCGGT TAAATCTGGC
TTTAAATTTA AGCATGACCG TGAGCAATAC CAGCTGTTCT GCCAAAGCTT CCCGTTTGAA
ACCACGCCAG ATCAAGAGCA GGCGATCAAC GCGGTGCTCA GTGATATGTG CCAACCGTTA
GCCATGGACC GCTTGGTTTG TGGTGATGTG GGCTTTGGTA AAACGGAAGT GGCGATGCGG
GCCGCATTTC TGGCCGTTAC CAATAATAAA CAAGTGGCGG TGTTGGTACC CACCACCCTG
CTGGCTCAAC AGCATTTTGA TAATTTCCGT GACCGCTTTG CCACTTGGCC GGTACGGATT
GAGATGCTAT CCCGTTTTCG CAGTGCCAAA GAGCAGCAAG TCATTCTGGA ACAAGCCGCT
GAAGGCAAAA TCGATATCCT TATCGGTACC CATAAATTGC TGCAAAGCGA TCTGCATTGG
CACGATCTCG GCCTGCTGAT TGTGGATGAA GAACACCGCT TCGGCGTGCG TCATAAAGAG
CGGATCAAAG CGATGCGGGC TGATGTTGAT ATCCTGACCC TGACGGCCAC GCCAATCCCA
CGCACACTGA ATATGGCGAT GAGTGGCATG CGTGACTTAT CAATTATCGC CACCCCTCCG
GCACGGCGTC TGGCGGTAAA AACCTTTGTC CGCGAATACG ATAGCCTGGT GATCCGTGAA
GCCATATTGC GTGAAATCCT GCGCGGTGGG CAAGTCTATT ACCTGTACAA CGATGTGGAG
AATATCGAAA AAGTCACGCA GAAACTGGCT GAATTAGTCC CTGAGGCTCG GATAGCCATC
GGCCATGGTC AAATGCGTGA ACGGGATCTG GAACGGGTGA TGAATGATTT CCACCATCAA
CGCTTCAATG TGCTGGTCTG TACCACCATT ATTGAAACCG GTATTGATAT TCCCAGCGCC
AATACCATTA TTATTGAGCG AGCGGATCAC TTGGGTCTGG CGCAGTTGCA CCAGCTCAGA
GGCCGGGTCG GGCGCTCTCA CCATCAGGCT TATGCCTACT TGCTGACCCC CAATCCAAAA
GCCATGAGCA CCGATGCGAA GAAACGGCTG GAAGCCATTG CGTCACTGGA AGATCTCGGT
GCAGGTTTTG CATTGGCGAC ACATGATTTG GAAATCCGTG GTGCCGGGGA GCTATTGGGC
GAGGACCAAA GCGGCCAGAT GACCACGATT GGCTTCTCGT TGTATATGGA GTTACTGGAA
AGTGCCGTAG ATGCGCTAAA AGAGGGCCGC GAGCCTTCAT TAGAAGACCT GACCAGCAAC
CAAACCGAAA TAGAAATGCG CATGCCGGTG CTGCTGCCAG AGGATTTCAT TTCAGATGTG
AATATCAGGC TGTCGTTCTA TAAACGTATC GCCAGTGCGC GCAACGAAAC CGAGCTGGAT
GAGTTAAAAG TTGAGCTAAT CGATCGCTTT GGCAAGTTAC CCGACCCCGC CCGCTATTTA
TTGCATACCG CCGAATTGCG TCAACAAGCC CAGAAACTGG GTATCAAACG TATTGAAGGC
AATGAGCGTG GCGGTTTCAT TGAGTTTGGC GAGAATAATA AAGTGGATCC GGTGTATTTG
ATTGGGCTGT TACAACGGCA ACCACAGATT TACCGTTTGG AAGGGCCAAC CAAATTGAAG
TTTATGCAAG ATTTGAGTGA TCGGGCGCAA CGGTTGAAAT TTATTACGGA GTTACTGGCG
GCATTTGCAC AACATCGCAT TGCCTAG
 
Protein sequence
MSQQYRYSLP ERRGDTRQLG QLTGSACAVE CAEIIERHDG PVMLITPDMQ TALRLRDEIQ 
QFSPQPVSTL SDWETLPYDS FSPHQDIISA RLSCLYHLPA MKRGVIILPI NTLMQRVCPH
EFLHGHALVM KKGQHLSRDK LRAQLEQAGY RSVEQVMEHG EFATRGALLD LYPMGSNEPY
RIDFFDDDID SLRVFDVDSQ RTLVEVEQIN LLPAHEFPID KAAIELFRSQ WREQFEVRRD
NEHIYQQVSK GIWPAGIEYW QPLFFSQQLP TLFSYLPENT LLVNTGDLES SAERFWQDVN
QRFESRRVDP MRPLLAPESL WLRVDALFNE LKEWPRVQLK TEAQPAKAAN TNLCYQPLPD
LSVQAQQKAP LDNLRRFIES FHGSVVFSVE SEGRRETLQD LLARIKLSPT LITTLSQAAN
PGHYLMVGAS ERGFLDTDKQ LALICESDLL GERVSRRRQD NRRTINTDTL IRNLAELRPG
QPVVHLEHGV GRYLGLTTLE AGGIKAEYLI LTYAGEDKLY VPVSSLHLIS RYSGGADDNA
PLHRLGSDVW SRARQKAAEK VRDVAAELLD IYAQRAVKSG FKFKHDREQY QLFCQSFPFE
TTPDQEQAIN AVLSDMCQPL AMDRLVCGDV GFGKTEVAMR AAFLAVTNNK QVAVLVPTTL
LAQQHFDNFR DRFATWPVRI EMLSRFRSAK EQQVILEQAA EGKIDILIGT HKLLQSDLHW
HDLGLLIVDE EHRFGVRHKE RIKAMRADVD ILTLTATPIP RTLNMAMSGM RDLSIIATPP
ARRLAVKTFV REYDSLVIRE AILREILRGG QVYYLYNDVE NIEKVTQKLA ELVPEARIAI
GHGQMRERDL ERVMNDFHHQ RFNVLVCTTI IETGIDIPSA NTIIIERADH LGLAQLHQLR
GRVGRSHHQA YAYLLTPNPK AMSTDAKKRL EAIASLEDLG AGFALATHDL EIRGAGELLG
EDQSGQMTTI GFSLYMELLE SAVDALKEGR EPSLEDLTSN QTEIEMRMPV LLPEDFISDV
NIRLSFYKRI ASARNETELD ELKVELIDRF GKLPDPARYL LHTAELRQQA QKLGIKRIEG
NERGGFIEFG ENNKVDPVYL IGLLQRQPQI YRLEGPTKLK FMQDLSDRAQ RLKFITELLA
AFAQHRIA