| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1371 |
|---|
| Symbol | |
|---|
| ID | 5386294 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 1606706 |
|---|
| End bp | 1608055 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640864353 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001400350 |
|---|
| Protein GI | 153949757 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 46 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGAACTA ACAAAGTCGT TTGGAGTGAG GGGCTTTTTC TTCGCCCACA ACTTTTTCAA
CAGCAAGAGC GCTATCTTGA ATATTACGCC CATAAGCGAG CGGCAACGAT AACCCCATTC
TTTTGGGGAT TTGCGCAATA TGAAATTGAT AGAGAAGCAC TCTCGTATGG CAAATTAGTA
TTGCGATCTG GGAAGGGCGT GTTACCCGAC GGTACACCAT TTGATATTCC CGGCCATGCT
GAATTGCCTG AACCGCTCAC TATCACCCCA GAACATCTGG GTAAGTTGAT CTATCTGGCG
GTCCCACTGC GCCTGGATAA CAGTGATGAA ACCATTTTTG ATGAGCACGA TATGAGCTCA
TTGGCACGTT TTTACGCCTA TGAAGCTGCG CTCAACGATA CCAATGCCAT TCGGCAAGGG
CCGAAGCCGG TACAACTGTC AAGATTACGC CTCAGATTAG TCTCAGAAGG TGAGATGACA
GAATCATGGA TTGGGCTGCC ATTAACCAAA GTCAGAGCGA TTCAGCCTGA TGGTAGTGTC
TTGCTACACA CCGAAGATTA TATTCCTCCG GTGACGGGTT ATGCCGCAAG TTCATTGCTG
TCTGAATGGT TAACCCATCT TAATGGTTTG GTTAAAATGC GCGCAGAGAT GTTGGCCAAT
CGCTTGTCAA ACAGTGATGG GAAAGCGAGC GCCAGCGCAG AAATTGTCGA TTATTTGCTA
CTGCAAATTT TTAATAAATA TGAGCCGATT CTCGATCATT TAAGGCACAT TCCTGAATTA
CCGCCTATTA CGCTTTATCA GGAATTGGCT AAGTTCTCGG GGGAATTATC TACCTTTATC
CGGACCAAAA CCCGCCGACC CCGTCCGGCA CCTGGCTATG ATCATGCGAA GCTCTATGCG
TCTATTCGTC CGTTGGTTGA CGAAGTTCAT GAACTACTGA ACCAGATCTT GGTGCGTGCT
GGGCAGATGA TACCGCTGGA GACGAAAGGC AATGGCGTTT GGTCTGCCTC CGTACTGCCT
AATGAATTAC GCTCGTTTTC AAATCTGGTC CTTGCCGTTC ATGCGCAATT ACCGATGGAT
GTGCTACAGC ATCAATTTTC AGTACAAACA AAAATCAGCG CACCTCAGCA ATTACATGAA
CTGGTGCGAT CGCATTTGCC AGGGTTGGAA CTACAGCGTT TGCCGGTACC GCCCAGACAA
ATTCCGTATA GCGCAGGGTA CGTTTATTTT GAATTGATAA AAAATGGCCC CTTCTGGGAC
AAGGTTTCCA ATGCTGGTGC CATCGCCTTG CACGTGGCGG GTGATTTCCC TGCCTTGAAA
ATGGAGCTCT GGGGGATTAG AGATTCATGA
|
|---|
| Protein sequence | MRTNKVVWSE GLFLRPQLFQ QQERYLEYYA HKRAATITPF FWGFAQYEID REALSYGKLV
LRSGKGVLPD GTPFDIPGHA ELPEPLTITP EHLGKLIYLA VPLRLDNSDE TIFDEHDMSS
LARFYAYEAA LNDTNAIRQG PKPVQLSRLR LRLVSEGEMT ESWIGLPLTK VRAIQPDGSV
LLHTEDYIPP VTGYAASSLL SEWLTHLNGL VKMRAEMLAN RLSNSDGKAS ASAEIVDYLL
LQIFNKYEPI LDHLRHIPEL PPITLYQELA KFSGELSTFI RTKTRRPRPA PGYDHAKLYA
SIRPLVDEVH ELLNQILVRA GQMIPLETKG NGVWSASVLP NELRSFSNLV LAVHAQLPMD
VLQHQFSVQT KISAPQQLHE LVRSHLPGLE LQRLPVPPRQ IPYSAGYVYF ELIKNGPFWD
KVSNAGAIAL HVAGDFPALK MELWGIRDS
|
|---|
| |