| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1365 |
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| Symbol | |
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| ID | 5388018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 1599821 |
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| End bp | 1602322 |
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| Gene Length | 2502 bp |
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| Protein Length | 833 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640864347 |
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| Product | fimbrial usher protein |
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| Protein accession | YP_001400344 |
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| Protein GI | 153949244 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.347917 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATACCCG TTGAGTTTAA CGCCGACTTT ATTCACGGTG GTGGGGTCGA TGTCATGCGA
TTTATGCATG AAAACCCTGT TGCACCAGGA GTATACGATG TCACCGTCAT CATTAATGGC
AAAAATCGCG GTAAACACCG TATCCGCTTT GAATTAAGCG AAGGGGAATC TACCGCAGAA
CCTTGTTTTA CCTTGGAACA GCTTGATTCT ATTGGCCTGA AAATTGAAAC AAGCGATACA
GATTTATTAG TAAACGGAAA AGCAGCACCC AAAGATCAGT GTTACAACTT AAGGGCATTG
ATTAAAGACA GCCATGTTAA CTATAACTCC GGTGATCTTG AACTTTCACT CACCGTACCG
CAGTTTAATT TGGTGCATCA TCCGCGTGGG TATATTGATT CCAGTTTGTG GGATGCGGGT
GGGACAGTTG GTTTTCTGGA TTACAACAGT AATGTTTATA GCATCTTTAA TGGCCGCTCT
AACAGCGATG TAGGTTCAGA TAACTCAAAT AGCTACAACA GTAATATTGG GCTATCAGCC
GGTATTAATC TTGGTGAGTG GCGGTTCAGG AAGCGTCTTA ATACTACCTG GTCGAATAGC
AGTGGTATGC ACACTCAGAA TCTGTATGGG TATGCCGCGA CAGATATTAC CGCGTTAAAA
AGTCAATTAA CGATTGGGGA TACCAATACC CAAGGGAGTT TATTCGATAG TTATGCATTA
CGTGGTGTGC TATTGGCATC AGATACTCGG ATGTTGCCGG AGGGAATACG TAATTACTCT
CCTATCGTCA GAGGGATAGC TGAGACAAAT GCCAGAGTGA CGGTGACGCA GCGCGGGCAA
ATTATTTATG AAACGGTGGT CACACCGGGA GCCTTTGAAC TGACCGATAT CGGCACGATG
TCGTACGGCG GTGATTTACA AATGACGATC ACGGAGTCTG ATGGCCGAAC GCGTATCCAA
AGGATCCCGT TTTCAGCTCC CCCGATGTTG CTTTACCAAG GGGTGTCCCG GTTCGATTTT
TCGGCAGGTC AACTGAATGA CAGTTCGATA AACCATAATC CGGCGATTGT CCAAGGGGCA
TACCATTATG GTTTGGGAAA TACGTATACC CTCTATGGTG GGGCACAGGT TGCTGAGAAT
TATCGTTCGG TTGCGATAGG TAACGCGTTC AATACCCCGT TGGGAGGGGT ATCGATGGAT
ATCACACATG CTAAAAGTGA ATTAGCGGGT GATCGTCGCT CCAGCGGTAA TAGCTATAAA
ATTGATTACT CCAAATACGT AGGAGAAACC GATACCAACC TGACATTGGC CGCCTATAGA
TACTCTTCCG GTGGGTATTA CAGTTTTAGG GAAGCCAGTC TGGATCGTTA TGGGAACAGT
AATGGGATTG ATGAAATTGA CTTTCGTACC CGTAATCGGT TGTCACTCAG TGTCTCCCAA
CGCGTAGCGG ATAATATGTC AGTTAACCTG AACAGCAGCC TTTATAGCTA CTGGGGCAAT
CAGGATGCAT CACAACAATA TTCGGTGGGT TTTAACCATT CACTGCGCTC TTTCTCTTAT
ACGGTGAGTG CGATACGCAC CAGTAATAGC GGTAATAGCA GTAATGGCGA CAATGATCGG
GAATATGAAA ATAGTTATAT GCTCGCGGTC AGCATACCTA TTGGCGGGAG TGGGAAGAAT
AAACCGCTGT TTAGTTCGCT CTCGACCATG GTTAGCCATA GTGAAGCCGG TGATACACAG
TTACAGCTGA CTACGAGTGG TAGCCGGGGT GATCAGAACG AGTTGACCTA TGGAATAGGT
ACGTCATATG GCAATCGTAA TGATGCGTCT TCTGAGCAAT CTGTGATAGG GAATATGGGT
TATCAGTCCT CGGTGGGCCA ACTGGGTATG ACAGCGTCAG CCAATAATAA TGCATCACGG
CAGCTTTCTG TTTCGGCAAG CGGCAGCCTG GTGGCTCATC AGGGCGGCGT GATAGCGGGC
CCACGACTTG GCGATGCGCC TTTTGCCATC ATCAATGCTC AGGGTGCCGG AGGGGCTAAA
GTGTTTAATG GCCGCGGTGC AAAGATTGAT AGTAATGGAT ATGCGCTGGT GCCATCACTG
ACACCGTATC GGGAAAATAC CATTGCGATT GATTATAAAG ACTTGCCTGA GACAGTCGAT
ATTCTGGAGA ACCATAAAGT GGTGGTACCC AGAATGGGCG CGATGATCCC AGTCAAGATG
AAAACTATGA CAGGTAATCC GATGATGCTT ATTGTCAGGG ATGAAAATAA AGAGTTTCTT
CCTATCGGCA CTGATTTATT GGATGCGGAT GGGGTGAGTC AAAGTATTGT TGGGCAAGGT
GGAATGGCAT TTATTCGTGG ATGGGATCCT GTATCGCAAC CAATTACAGC AACCTTAAAT
GGCGGCATAG ATAAATGTGT CATTAAACCT GATGCGAAAA TCGATACTGC TACAAAGACA
GTGCAAATAA TACAGTTGGA GGTGATATGT CTTCGTCGCT AA
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| Protein sequence | MIPVEFNADF IHGGGVDVMR FMHENPVAPG VYDVTVIING KNRGKHRIRF ELSEGESTAE
PCFTLEQLDS IGLKIETSDT DLLVNGKAAP KDQCYNLRAL IKDSHVNYNS GDLELSLTVP
QFNLVHHPRG YIDSSLWDAG GTVGFLDYNS NVYSIFNGRS NSDVGSDNSN SYNSNIGLSA
GINLGEWRFR KRLNTTWSNS SGMHTQNLYG YAATDITALK SQLTIGDTNT QGSLFDSYAL
RGVLLASDTR MLPEGIRNYS PIVRGIAETN ARVTVTQRGQ IIYETVVTPG AFELTDIGTM
SYGGDLQMTI TESDGRTRIQ RIPFSAPPML LYQGVSRFDF SAGQLNDSSI NHNPAIVQGA
YHYGLGNTYT LYGGAQVAEN YRSVAIGNAF NTPLGGVSMD ITHAKSELAG DRRSSGNSYK
IDYSKYVGET DTNLTLAAYR YSSGGYYSFR EASLDRYGNS NGIDEIDFRT RNRLSLSVSQ
RVADNMSVNL NSSLYSYWGN QDASQQYSVG FNHSLRSFSY TVSAIRTSNS GNSSNGDNDR
EYENSYMLAV SIPIGGSGKN KPLFSSLSTM VSHSEAGDTQ LQLTTSGSRG DQNELTYGIG
TSYGNRNDAS SEQSVIGNMG YQSSVGQLGM TASANNNASR QLSVSASGSL VAHQGGVIAG
PRLGDAPFAI INAQGAGGAK VFNGRGAKID SNGYALVPSL TPYRENTIAI DYKDLPETVD
ILENHKVVVP RMGAMIPVKM KTMTGNPMML IVRDENKEFL PIGTDLLDAD GVSQSIVGQG
GMAFIRGWDP VSQPITATLN GGIDKCVIKP DAKIDTATKT VQIIQLEVIC LRR
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