| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1198 |
|---|
| Symbol | |
|---|
| ID | 5387385 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 1409955 |
|---|
| End bp | 1410434 |
|---|
| Gene Length | 480 bp |
|---|
| Protein Length | 159 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 640864175 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001400179 |
|---|
| Protein GI | 153948126 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
|---|
| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.00141696 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAACT TAATTTATGC AAGTATTGAT GGCGAAAAAC AAGGGTTGAT ATCGTCTGGC
TGCTCAACGC TTGACTCTAT TGGTAATCGA TGTCAGTTGG GGCATGAGGA TCAAATATAT
GTCTATGGGT TTGATCATAA TATAGCCAGA GCACAAAATG TCGCGCATCA GCCAATCATA
ATAACCAAAC CTATTGACAA ATCATCGCCT TTGCTAGGGA TGTCTATATC GAATAATGAA
AAACTACAAA TAGTATTATA TATGTACAGG GTAAATTCAT CGGGTTCCTT AGAGGTGTTT
TATACAATAA AACTGAAAGA CGCCTATATC TCAAATATTT CTCAACATTG CCCAAATGCG
CTGACACATA ATGATATTCA GCCCTATGAA ATCATATCAA TTTCGTACAA AAGCATTGAT
TGGGAGCACA ATATTTCTGG GACATCTGGC TATAGCATAT GGGATGAAAG AGTTTATTGA
|
|---|
| Protein sequence | MANLIYASID GEKQGLISSG CSTLDSIGNR CQLGHEDQIY VYGFDHNIAR AQNVAHQPII
ITKPIDKSSP LLGMSISNNE KLQIVLYMYR VNSSGSLEVF YTIKLKDAYI SNISQHCPNA
LTHNDIQPYE IISISYKSID WEHNISGTSG YSIWDERVY
|
|---|
| |