| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0955 |
|---|
| Symbol | gspF |
|---|
| ID | 5388339 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 1145225 |
|---|
| End bp | 1146427 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 640863921 |
|---|
| Product | general secretion pathway protein F |
|---|
| Protein accession | YP_001399939 |
|---|
| Protein GI | 153950854 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.110988 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGTAT TTAAATATGT TGCCATCAGC AGAAGTGGAA CCAAGATAAC AGGTGATATT
GATGCGGAAA ACATACGTAT AGCCCGTTAT CTCCTTTACA AAAAAAACAT GCATGTCTTA
AGTATAAAAA AAAGAATTTT ACTTTTTAAT AAGTATGTGG TCAAAAAAAA TAGTAATAAG
ACGGATTTGG TATTAATTAC ACGGCAGATA GCAACATTAG TAAATGCTTC AATGCCACTA
GATGAGGTTT TAGATATTGT TGGGAAACAA AATAGTAAAA GTAAAATGAT TGAAATAATT
CAAAGGATTA GAGTTAATAT ACAGGAAGGG CATTCATTCG CTGATGCGCT ATCTCCGTTT
CCAGCAGTAT TTAGCCCATT ATACAAAACG ATGGTTACCG CTGGAGAGGT ATCAGGGCAT
CTGGGATTAG TGCTGGTTCG TCTTGCTGAA CATATTGAGC AGACACAAAA AATACAAAGA
AAAATCATTC AGGCACTTAT CTACCCTTGT GTGTTGGTTT TAATATCACT AAGTGTCATT
GTCATATTAT TGACAGCGGT TGTACCGAAC ATAGTAGAGC AGTTTTCTTT TTCAGAGACG
GCGTTACCAT TATCAACAAA AGTATTGATG ATACTCAGTT ATAGTATAAA AGAAAATGTT
ATTTTTATCA TTGCTATAGG TGTCTCGGCA GTGATTTTTT TAAATAGATT ACTAAAAATA
AATAAGATAA ATATCTTTTT TCATAGGCAC TATTTAAGTT TGCCAATGCT GGGTAATATG
TTTGTTCGTA TAAATACATC TCGTTATCTT AGAACATTAA CAACACTACA TTCTAATGGT
GTGACAATCG TACAGGCAAT GAGTATTAGT AATGCGGTAT TAACGAATGT ATATATAAAA
AATAAGTTAA ACATTTCAGT TAAATTGGTC AGTGAGGGGT GCAGTTTATC GTCATCTTTA
GTTGATAGTG GAGTATTCCC CCCGATCATA TTACATATGA TCATATCGGG GGAGCGTAGT
GGTAAGTTGG ACCATATGCT AGAAACTGTG GCGGGTGTCC AGGAAGAAGA ACTGATGAAT
CAAATAAGTA TAGTAATGTC ATTGTTAGAG CCAACCATAA TTATAGTTAT GGCCGCGTTT
ATTTCATTTG TTATTCTGTC AATTCTTCAG CCAATACTTG AAATTAATAG CCTTGTCATG
TAA
|
|---|
| Protein sequence | MAVFKYVAIS RSGTKITGDI DAENIRIARY LLYKKNMHVL SIKKRILLFN KYVVKKNSNK
TDLVLITRQI ATLVNASMPL DEVLDIVGKQ NSKSKMIEII QRIRVNIQEG HSFADALSPF
PAVFSPLYKT MVTAGEVSGH LGLVLVRLAE HIEQTQKIQR KIIQALIYPC VLVLISLSVI
VILLTAVVPN IVEQFSFSET ALPLSTKVLM ILSYSIKENV IFIIAIGVSA VIFLNRLLKI
NKINIFFHRH YLSLPMLGNM FVRINTSRYL RTLTTLHSNG VTIVQAMSIS NAVLTNVYIK
NKLNISVKLV SEGCSLSSSL VDSGVFPPII LHMIISGERS GKLDHMLETV AGVQEEELMN
QISIVMSLLE PTIIIVMAAF ISFVILSILQ PILEINSLVM
|
|---|
| |