Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_0953 |
Symbol | gspD |
ID | 5384409 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 1141808 |
End bp | 1143730 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 640863919 |
Product | general secretion pathway protein D |
Protein accession | YP_001399937 |
Protein GI | 153949658 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.198389 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTATATTA GTGGCAAAGG AATTAAATCT ATCCATGGGA TGATTTTTTT ATTCACTCTA ATTATGCCAT TAGACATAAT AAGTGCTAAT TTTTCAGTCT CTTTCAAAGA TGTGGATATA AAAGAGTTTA TTAATTCAGT AAGTAAGAAT ATTAATAAAA CTATTATCAT AGATCCTACG GTCCAAGGGC TTATCAGCAT TCGCAGTTAT GAGAATTTGG ATAAAGATAC GTATTATCAA CTATTCTTGA ATGTGCTTGA TGTCTATGGT TATGCGGCCA TTGAGATGCC ACATAATGTC CTCAAAGTGA TTTCATCAAA AAGAGCCAAA GGAGTAGTCG CACCGCTCCC AAAAGAGGGG GTAACATTCG ATGGTGATGA ATTGATAAAT AGAGTTATTC CTCTTAGGTA CATATCAGCA AAGAAAATAA CGCCATTATT GAGGCAACTC AATGATAATA CGGAGTCTGG CAGTATTATT AATTATGACC CATCTAATAT TTTGTTAATT ACAGGGCGTG CTGCGGTAGT AAACCGTCTG CATTCAATAG TTACTGATCT TGACCAAGCC GGAGATAATG AAATTGAGCT TTATAAACTC AATTATGCGA TTGCTGCTGA TGTTGTTAAA ATAGTAAATG AAGCTATAAA TCCAATAAAT AATTTAAAAC AAGAAGTATC AATAGTAGGA AAGGTTATTG CTGATGAAAG AACAAACTCT ATATTAATCA GCGGTGATAC ATATATCAGA AAAAAATCCA TTCTAATGAT AAAAAAACTC GACAAGAGAC AAAGTAGCGA TGGGAATACA AAAGTGGTTT ATATGAAATA TGCTCAAGCC TCAAAGCTAT TAGATGTCTT AAATGGAATA AGCGAAGGTT TTCATAATGA GAAAAAAACA AAACAATCTA ATCAATGGAA TCAGAGACCT GTAGCAATAA AGGCATATGA TCAGACGAAT GCATTAGTTA TTACGGCAGA TCCTGACATG ATGCTAGCCT TAGGAGAAGT AATAGAAAAA TTAGATATCA GACGTGCACA GGTTTTGGTT GAGGCTATTA TTGTCGAAAC TCAAAACGGA GAAGGTATTA ACCTTGGTGT TAAATGGGAA AATAAGCGTT CTGATGATAT TAATTTTATT AAAAATTCCG ATGGTTTATT AAATAATAAT GGATGGGGCA TAGCTACGAC AATTACTGGA TTAACTGCTG GTTTTTATAA AGGAAACTGG GATGTATTGC TTAGCGCTTT ATCAACAAAT ACAAATAATA ATATACTCGC AACTCCCAGT ATTGTTACTC TCGATAATAT GGAGGCTGAA TTCAATGTGG GTCAGGAGGT TCCAGTGCTC ATATCAACGC AAACGACAAC CACAGATAAG GTATATAATT CAATTTCAAG GCAATCTATA GGTGTCATGC TAAAAGTAAA GCCACAAATA AATAAAGGTG ATTCGGTTCT ACTTGAAATC AGGCAAGAGG TGTCGAGTAT CGCTGATAGT TCTACTGTTA ATACACATAA TTTAGGGTCT GTTTTTAATA AACGAGTAGT GAATAATGCA GTATTAGTTA AAAGTGGAGA AACAGTTGTT GTTGGTGGAT TACTTGATAA GAAGTCTAGT ACGATTGTTA ATAAAGTCCC CTTCTTGGGT GATCTCCCAT TAATAGGATG GCTATTTAGA CAAACCAAAG AGAAAGTGGA AAAAAGTAAT CTTATTCTAT TTATAAAACC GACAATACTT AGGGAATCCG ATGACTATAG CGTTGTGACG TCAAAAGAAT ATAATAAATA TAAAAAAGAT AATATGAATG GATATACTTT AGCCGATGAT ATAGTCCTAT CAGATAAAAA ATATTTAAGT GTTATTCCTA GTATTAGGAA AGATATAAAT AATTTTTATA CACTGTTGGA CTCAGAGCTA TGA
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Protein sequence | MYISGKGIKS IHGMIFLFTL IMPLDIISAN FSVSFKDVDI KEFINSVSKN INKTIIIDPT VQGLISIRSY ENLDKDTYYQ LFLNVLDVYG YAAIEMPHNV LKVISSKRAK GVVAPLPKEG VTFDGDELIN RVIPLRYISA KKITPLLRQL NDNTESGSII NYDPSNILLI TGRAAVVNRL HSIVTDLDQA GDNEIELYKL NYAIAADVVK IVNEAINPIN NLKQEVSIVG KVIADERTNS ILISGDTYIR KKSILMIKKL DKRQSSDGNT KVVYMKYAQA SKLLDVLNGI SEGFHNEKKT KQSNQWNQRP VAIKAYDQTN ALVITADPDM MLALGEVIEK LDIRRAQVLV EAIIVETQNG EGINLGVKWE NKRSDDINFI KNSDGLLNNN GWGIATTITG LTAGFYKGNW DVLLSALSTN TNNNILATPS IVTLDNMEAE FNVGQEVPVL ISTQTTTTDK VYNSISRQSI GVMLKVKPQI NKGDSVLLEI RQEVSSIADS STVNTHNLGS VFNKRVVNNA VLVKSGETVV VGGLLDKKSS TIVNKVPFLG DLPLIGWLFR QTKEKVEKSN LILFIKPTIL RESDDYSVVT SKEYNKYKKD NMNGYTLADD IVLSDKKYLS VIPSIRKDIN NFYTLLDSEL
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