Gene YpsIP31758_0811 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_0811 
SymbolspeC 
ID5387725 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp978327 
End bp980489 
Gene Length2163 bp 
Protein Length720 aa 
Translation table11 
GC content45% 
IMG OID640863775 
Productornithine decarboxylase 
Protein accessionYP_001399795 
Protein GI153949719 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1982] Arginine/lysine/ornithine decarboxylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACACTAT TAAAAATAGC AACAAGCGCC CGCCTGGCTT CTTATGTAGA AACTCAGCGC 
GGAGTGGTGT ACCTCAATCA GACTGATTTT ACTGATGTTG CCGCGGTGGT AATGTCGGTT
GAAGATGCAA ATGCGGGTAT ATTGTCAATG CTGCATGACC TTGGTTTTGC TATTCCTGCG
TTTATTGCCG TGACGGCAGA ACAGACGGTC TCTGCTGATT ATTTGCCCTT GATTAAAGGT
GTCATTACGC TTGGTGAAGC AAATAAAGCT TTTTATAACG CTCAGGTAGA AGCTGCCGCC
AGTGAATATC AAAAGAATCT CTTACCGCCT TTTTTCTCAA CACTGAAAAA ATATGTCGAG
ATGAATAACT CGACCTTTGC TTGCCCTGGC CATCAGGGGG GCGAATTTTT TCGCAAGCAT
CCTGCAGGAC GCCAGTTTTT TGAATTCTAC GGTGAGACGA TTTTTCGTTC AGATATGTGT
AATGCCGATG TCAAATTAGG GGATTTACTT ATCCATGAAG GGGCGGCAAA AGATGCACAG
AAATATGCTG CTAAGGTATT CAATGCCGAT AAAACCTATT TTGTCCTGAA CGGGACCTCG
GCGGCCAACA AGGTCGTGAC CAACGCTCTA CTGACCCGTG GTGATTTAGT GTTGTTTGAC
CGCAATAACC ATAAATCTAA CCATCATGGT GCGCTGATCC AGGCGGGCGC GACGCCGGTT
TATCTGGAAA CGGCTCGTAA CCCCTTTGGT TTTATTGGTG GTATTGATGC GCACTGCTTC
AATGAAGATT ATTTACGTCA ACAACTGCGT GAAGTTGCTC CCGAGCGTGC AAAAGAGGCT
CGGCCATTCC GATTAGCGAT CATTCAATTG GGTACCTACG ACGGTACGGT ATATAACGCC
CGACAAGTAG TTGATAGCAT TGGTCATTTA TGCGATTACA TTTTGTTTGA TTCTGCTTGG
GTGGGTTACG AACAATTTAT TCCGATGATG AAGGATTTCT CACCGTTATT ACTGGAATTA
AATGAAAATG ACCCTGGGAT TATTGTGACT CAATCGGTAC ACAAGCAGCA GGCCGGTTTT
TCTCAGACCT CTCAGGTACA TAAAAAAGAT AATCACATTA AAGGACAGAA ACGTCACTGT
AACCATAAGC GTTTTAATAA TGCCTTTATG TTGCATGCAT CGACCAGTCC GTTTTATCCA
TTATTTGCGG CATTGGATGT TAATGCCAAA ATACACTCTG GTGACAGTGG CCGCCGTATG
TGGATGGATT GTGTAATACT CGGTATTGAA ACGCGTAAAT CGTTATTGGT ACGCTGTTCG
ATGTTACGGC CTTTTATTCC TCCAGTTGTT GGCGGTAAAA ATTGGCAAGA TTATGCTACG
GATGTGATTG CCAATGATGC GCGCTTCTTT AATTTTGTTC CAGATGAACG CTGGCATGGA
TTTGAGGGAT ATAACCAAGA TCAGTATTTG GTTGATCCGT GCAAATTATT GCTGACGACG
CCGGGAATTG ATGCCAGCAC TGGCCGATAT ACTTCGTTTG GTATTCCGGC GGCTATTTTG
GCGACTTTCC TGCGTGAAAA TGGGATTGTG CCAGAAAAAT GTGATCTTAA CTCGATCCTA
TTCCTGCTGA CCCCGGCAGA AAATACCGCC AAAATGGCAC ACCTAGTGGA TATGTTGGTG
CAGTTTGAAC GCTATGTTGA ACAAGATGCG AAGCTGTGTG ATGTATTACC GACGATCTAT
CGTAAGAATG AAGAGCGTTA TCACGGTTAT ACCTTGCGTC AGTTATGCCA AGAAATGCAT
GACCTGTACG TCAGCCATGA CGTTAAGCAA TTGCAAAAGG ATATGTTCCG TAAAGCCAGT
TTCCCGCGGG TAGTCATGAA CCCGCAAGAC GCCAATATTC AGTTTATCCG CGATAATATT
GAGTTGATTC CTATTGCTGA AGCTGAAGGC CGTATTGCCG CCGAAGGCGC TTTGCCTTAT
CCACCGGGTG TGCTGTGTGT GGTGCCCGGT GAAGTGTGGG GTGGGGCGGT TCAGCGTTAT
TTTCTGGCGC TGGAAGAGGG GATTAACTTA CTGCCGGGCT TTTCACCTGA GTTACAGGGC
GTTTATATCG AAAAAGGTGA TGTGTCTTGG CGGCGTATCT TTGGTTATGT GATTACGCAA
TAG
 
Protein sequence
MTLLKIATSA RLASYVETQR GVVYLNQTDF TDVAAVVMSV EDANAGILSM LHDLGFAIPA 
FIAVTAEQTV SADYLPLIKG VITLGEANKA FYNAQVEAAA SEYQKNLLPP FFSTLKKYVE
MNNSTFACPG HQGGEFFRKH PAGRQFFEFY GETIFRSDMC NADVKLGDLL IHEGAAKDAQ
KYAAKVFNAD KTYFVLNGTS AANKVVTNAL LTRGDLVLFD RNNHKSNHHG ALIQAGATPV
YLETARNPFG FIGGIDAHCF NEDYLRQQLR EVAPERAKEA RPFRLAIIQL GTYDGTVYNA
RQVVDSIGHL CDYILFDSAW VGYEQFIPMM KDFSPLLLEL NENDPGIIVT QSVHKQQAGF
SQTSQVHKKD NHIKGQKRHC NHKRFNNAFM LHASTSPFYP LFAALDVNAK IHSGDSGRRM
WMDCVILGIE TRKSLLVRCS MLRPFIPPVV GGKNWQDYAT DVIANDARFF NFVPDERWHG
FEGYNQDQYL VDPCKLLLTT PGIDASTGRY TSFGIPAAIL ATFLRENGIV PEKCDLNSIL
FLLTPAENTA KMAHLVDMLV QFERYVEQDA KLCDVLPTIY RKNEERYHGY TLRQLCQEMH
DLYVSHDVKQ LQKDMFRKAS FPRVVMNPQD ANIQFIRDNI ELIPIAEAEG RIAAEGALPY
PPGVLCVVPG EVWGGAVQRY FLALEEGINL LPGFSPELQG VYIEKGDVSW RRIFGYVITQ