Gene YpsIP31758_0782 details

Gene Information

• Locus tag: YpsIP31758_0782
• ID: 5386341
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: +
• Start bp: 938848
• End bp: 939339
• Gene Length: 492 bp
• Protein Length: 163 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640863746
• Product: hypothetical protein
• Protein accession: YP_001399767
• Protein GI: 153950535
• COG category: [S] Function unknown
• COG ID: [COG3157] Hemolysin-coregulated protein (uncharacterized)
• TIGRFAM ID: [TIGR03344] type VI secretion system effector, Hcp1 family

Plasmid Coverage information

• Num covering plasmid clones: 54
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAATTC CAGTCTATCT GTGGCTGAAA GACGACGGCG GTGCGGACAT CAAGGGTTCT 
GTTGATGTGC AAAGCCGTGA AGGCAGCATT GAGATCGTGG CACAGGACCA TAACCTGTAC 
ATCCCAACGG ATAACAATAC CGGCAAGCTG ACCGGTACGC GTATCCATAC CCCATTTGTT 
TTCACCAAAG AGATCGATGC GTCTACCCCT TATCTGTACA AAGCGGTAAC CACCGGTCAG 
ACGCTGAAAA CCGCTGAATT CAAATGGTAC CGCATTGATG ACGCTGGCCA GGAAGTTGAG 
TATTTCAACA CCAAACTGGA AAACGTCAAA GTGGTCAAAG TTGCGCCGAA AATGCACGAC 
GTCAAAGATC CGGCTAAAGA GAAGCACAAC CATCTGGAAC TGGTGGAATT GCGCTACGAA 
AAAGTCACCT GGACCTTCAA AGACGGCAAC ATCATTCATT CCGATTCTTG GAACGAACGC 
GCCACAGCAT AG 

 

Protein sequence

MAIPVYLWLK DDGGADIKGS VDVQSREGSI EIVAQDHNLY IPTDNNTGKL TGTRIHTPFV 
FTKEIDASTP YLYKAVTTGQ TLKTAEFKWY RIDDAGQEVE YFNTKLENVK VVKVAPKMHD 
VKDPAKEKHN HLELVELRYE KVTWTFKDGN IIHSDSWNER ATA