Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_0631 |
Symbol | fliF |
ID | 5387546 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 741329 |
End bp | 742969 |
Gene Length | 1641 bp |
Protein Length | 546 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640863602 |
Product | flagellar MS-ring protein |
Protein accession | YP_001399623 |
Protein GI | 153947902 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
Num covering plasmid clones | 47 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTTAGATA AAATTAAGCA GAAATTGTCA CCTGGTCAAT TAGGTGAAAA TACAAAAACC ATTCTTATGA GCGCGGCAGC CCTTTTGGTT ACCGCCGCGA TTATTTTCAG CCTCTGGCGT AGCTCACAGG GCTACACGGC GTTGTTTGGC TCGCAGGAGA ATATCCCGGT CACCCAAGTG GTGGAAGTGC TGGAAGGAGA GGCCATCGCC TACCGTATTA ACCCGGATAA CGGTCAGGTA TTGGTGGCTG AAAATCAGTT GGGTAAAGCG CGTATCTTGC TGGCAGCAAA AGGAATTACT GCCACACTCC CCATTGGCTA TGAGTTGATG GATAAAGAAA GCATGCTTGG CAGCAGCCAG TTTATCCAAA ATGTTCGTTA TAAACGCAGC CTGGAAGGGG AACTGGCACA GAGCATGATG GCATTGAGCG CGGTGGAATA TGCCCGAGTC CATCTGGGCA TGAGTGAAGC CAGTTCATTC GCCATCAGTA ATCGTTCAGA TAACAGTGCC TCGGTGGTGT TACGGCTAAG ATACGGCCAA ACATTGAGCA CTGAACAGGT GGGGGCCATT GTTCAATTGG TGGCGGGCAG TATTCCCGGA ATGAAACCTG CCAATGTGCG GGTGGTCGAT CAACACGGTG AATTACTGTC ACAAGCTTAT CAAGCGAACA GTGAGGGGGT GCCGAGTGTG AAAAGTGGGA CCGAATTAGC TCACTATTTG CAAAGCACCA CCGAGAAGAA TATCGCAAAC CTGTTGAATT CGGTGATTGG CGCGAATAAC TACCGCATCA GTGTCTCCAC TCAATTAGAT ATGAGTCGTA TTGAAGAGAC GGCGGAGCGC TATGGTCCGG ACCCTCGAAT CAATGATGAA AACATCCAGC AGGAGAACAG CAACGACGAC ATGGCGATGG GGATCCCCGG ATCACTAAGC AATCAGCCCA TCCCTCAATC TCAGGCGGGT CAAACGCCAG CCGCCGTCAG CCGCAGCCAG GCGCAGCGTA AATATATTTA TGATCGCAAT ATCCGCCATG TGCGTTATCC GGGTTACAAG CTGGAGAAAA TGACCGTTGC GGTGGTGCTG AATAAATCGC TCCCGGTGTT GGAACAGTGG ACGCCAGAAC AGCAGGAAGA ACTCAAACGT TTAATTGAAG ATGCCGCAGG TATTGATGTT AAACGTGGGG ATTCTCTGAC CATTAACGTG ATGGCCTTCG CGGTCCCTAC GTTGATTGAC GAGCCGGTGA TGCCGTGGTG GCAAGAACCA AGTACCTTCC GTTGGGCAGA ATTGCTGGGG ATCGGGCTGC TGTCATTACT GGTGCTGTGG TTTGGTGTTC GCCCATTGAT GAAACGCTAT TCGCGTAAGG GTTCGGAGAA CCTGCCGTTA GCCATTTCCT CGGCGAGTGC AGATGAGGCG CTTGATCATG TGGATACCGG TGTAGACGGT GTAGAAAGTA GCCCGCGTGC AGAAACCGCC TTCTCCGCGT CTTCTCTCTG GGAAAGCGAC GATCTACCAG AGCAAGGCTC CGGTTTGGAA ACCAAAATCG CCCATCTGCA ACAATTGGCG CAGTCAGAAA CTGAACGTAC CGCCGAAGTC ATTAAACAAT GGATTAACAG TAATGAACGA ATCAAATCTC AACCTGAATG A
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Protein sequence | MLDKIKQKLS PGQLGENTKT ILMSAAALLV TAAIIFSLWR SSQGYTALFG SQENIPVTQV VEVLEGEAIA YRINPDNGQV LVAENQLGKA RILLAAKGIT ATLPIGYELM DKESMLGSSQ FIQNVRYKRS LEGELAQSMM ALSAVEYARV HLGMSEASSF AISNRSDNSA SVVLRLRYGQ TLSTEQVGAI VQLVAGSIPG MKPANVRVVD QHGELLSQAY QANSEGVPSV KSGTELAHYL QSTTEKNIAN LLNSVIGANN YRISVSTQLD MSRIEETAER YGPDPRINDE NIQQENSNDD MAMGIPGSLS NQPIPQSQAG QTPAAVSRSQ AQRKYIYDRN IRHVRYPGYK LEKMTVAVVL NKSLPVLEQW TPEQQEELKR LIEDAAGIDV KRGDSLTINV MAFAVPTLID EPVMPWWQEP STFRWAELLG IGLLSLLVLW FGVRPLMKRY SRKGSENLPL AISSASADEA LDHVDTGVDG VESSPRAETA FSASSLWESD DLPEQGSGLE TKIAHLQQLA QSETERTAEV IKQWINSNER IKSQPE
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