| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0573 |
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| Symbol | tolC |
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| ID | 5384944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 672922 |
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| End bp | 674316 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640863545 |
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| Product | outer membrane channel protein |
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| Protein accession | YP_001399566 |
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| Protein GI | 153947584 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 45 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAAC TGCTCCCCCT TCTTATCGGG CTGAGTCTGG CTGGTTTCAG CACCATGAGC
CAGGCAGAGA ACTTGCTGCA AGTTTATAAG CAAGCCAGGG ATAGTAACCC GGATTTACGT
AAATCCGCTG CTGATCGCGA TGCCGCATAT GAAAAAATCA ATGAAGTACG CAGTCCACTG
TTGCCACAAC TTGGTTTAAG TGCCGGCTAT ACACATGCCA ATGGATTTCG TGACGCGTCT
AACAGCCCAG ATAGCAATAC CACATCAGGC TCTCTAAAAC TGACCCAGAC AATTTTTGAC
ATGTCTAAAT GGCGCGCCCT GACCTTACAG GAAAAAGTGG CTGGGATTCA GGATGTGACA
TTCCAGACCA GCGAACAGCA ACTGATTCTT AACACTGCAA CGGCTTATTT CAACGTACTC
AGAGCGATTG ACAGCCTCTC TTATACTGAA GCGCAGAAAC AATCGGTCTA TCGTCAGTTG
GATCAAACAA CTCAACGTTT TAATGTGGGT TTAGTGGCCA TTACTGATGT GCAGAACGCC
CGAGCCAGCT ACGATACCGT GTTAGCGGCA GAAGTGGCCG CCCGTAATAA TCTGGATAAC
GCACTAGAGA GCTTGCGCCA GATTACTGGT GTTTATTATC CCGAATTGGC ATCGTTGAAT
GTAGAACGAT TGAAGACTCA ACGCCCAGAT GCGGTTAATA ACCTATTGAA AGAAGCTGAA
AAACGTAACC TTTCTTTGCT TTCTGCCCGT TTGAGCCAAG ACTTGGCACG TGAGCAAATT
AAGTCTGCGG AAACGGGCTA TATGCCAACC GTCGATTTGA CCGCCTCATC TTCGATAACC
AATACCCGTT ACAGTGGCGG AACCCCCAGT TCTCAACAGG TAAATAATGA TTCCGGCCAG
AACCAAATTG GCGTGCAATT TAGCTTACCG CTGTACAGCG GTGGTGCCAC CAATTCTGCG
GTGAAACAAG CGCAGTATAA TTTCGTTGGT GCCAGTGAGT TGTTGGAAAG TGCACATCGC
AATATGGTGC AAACGCTTCG CTCATCATTT AATAATATTT CAGCCTCAAT CAGCAGCATC
AATGCTTACC AGCAAGTGGT TATTTCTAAC CAAAGCTCTT TGGATGCAAT GGAAGCTGGC
TATCAGGTAG GCACCCGTAC CATTCTGGAT GTTTTGACTG CAACGACTAA CCTGTATCAG
TCCAAACAAC AATTGGCTGA TGCTCGTTAT AACTATTTAA TCAATCAGTT AAATATCAAG
TCGGCACTGG GGACGTTGAA TATGAACGAC CTGATGGCAC TAAACGCCGT ATTGGATAAA
CCGGTCCCGA CGTCAGCGGC TGCTCTGGCA CCAGAGAATA CTCGCCAAAC TGTCGCTACA
CCACGCGCTC AGTAA
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| Protein sequence | MKKLLPLLIG LSLAGFSTMS QAENLLQVYK QARDSNPDLR KSAADRDAAY EKINEVRSPL
LPQLGLSAGY THANGFRDAS NSPDSNTTSG SLKLTQTIFD MSKWRALTLQ EKVAGIQDVT
FQTSEQQLIL NTATAYFNVL RAIDSLSYTE AQKQSVYRQL DQTTQRFNVG LVAITDVQNA
RASYDTVLAA EVAARNNLDN ALESLRQITG VYYPELASLN VERLKTQRPD AVNNLLKEAE
KRNLSLLSAR LSQDLAREQI KSAETGYMPT VDLTASSSIT NTRYSGGTPS SQQVNNDSGQ
NQIGVQFSLP LYSGGATNSA VKQAQYNFVG ASELLESAHR NMVQTLRSSF NNISASISSI
NAYQQVVISN QSSLDAMEAG YQVGTRTILD VLTATTNLYQ SKQQLADARY NYLINQLNIK
SALGTLNMND LMALNAVLDK PVPTSAAALA PENTRQTVAT PRAQ
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