Gene YpsIP31758_0456 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_0456 
SymboldegQ 
ID5388478 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp530334 
End bp531707 
Gene Length1374 bp 
Protein Length457 aa 
Translation table11 
GC content49% 
IMG OID640863425 
Productprotease DegQ 
Protein accessionYP_001399449 
Protein GI153949437 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.00000901384 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAAA CATCATTACT TCTTAGTGCG CTAGCAATAA GCGTCGGCTT AGGTCTCGCT 
TCTGTTCCTA TGGTGAGTGC AGCAGCACTG CCTGCGGCGG TCGCCGGACA AACGTTACCT
AGCCTGGCAC CAATGCTGGA AAAAGTATTA CCCGCCGTTG TCAGTGTTCA TGTCTCTGGG
AGCCAGGCAC AGCAACAACG CTTGCCAGAA GAGTTTAAAT TCTTCTTTGG CCCGAATGCA
CCATCAGGAA AAGAGAGCAG CCGGCCATTC GAAGGCTTAG GATCAGGCGT TATTATTAAC
GCTGAGAAGG GCTACATCCT GACCAACAAT CACGTCATCA ATAATGCCGA TAAAATTCGT
GTTCAGTTGA ATGATGGTCG TGAATACGAT GCAAAATTGT TGGGTCGTGA TGAACAAACC
GACATCGCTT TACTGCAATT AACGGATGCT AAAAATCTGA CTGCGATCAA AATTGCAGAT
TCCGATAACC TGCGGGTGGG GGATTTTGCT GTCGCCGTAG GTAACCCGTT TGGTCTAGGG
CAAACCGCGA CGTCAGGTAT TATTTCAGCA CTGGGTCGTA GTGGCTTGAA TCTGGAAGGG
CTGGAAAACT TTATCCAGAC CGATGCCTCA ATCAACCGTG GTAATTCTGG CGGTGCTCTG
GTGAATCTGG ATGGGGAACT GATCGGAATT AATACCGCCA TCCTTGCGCC AGGTGGCGGT
AATATCGGTA TCGGCTTCGC TATCCCAAGT AACATGGCAC AAAACCTCAG CCAGCAGTTG
ATCGAGTTTG GCGAAGTGAA ACGTGGGCTG CTCGGTATCC GTGGTAGTGA GATGACGGCT
GACATTGCGA AAGCCTTTAA TATTGATGCT CAGCGTGGGG CTTTTGTCAG TGAAGTGCTG
CCAAAATCAG CGGCAGCGAA AGCCGGGATC AAACCAGGTG ATGTGTTGAT TTCCGTTGAT
GGGAAAAAGA TTAGCAGCTT TGCTGAATTG CGCGCCAAAG TCGGGACAAC GGGGCCAGGC
AAAACCATTA AAATTGGTTT ACTGCGCGAA GGGAAACCAC TGGAAGTATC GGTGACGCTG
GATAACAGTA GCTCAACATC CACCAGCGCT GAAAATTTAT CGCCATCATT ACAGGGCGCA
TCCCTGAGTA ACGGTGAGCT CAAAGACGGT AGTAAGGGGA TCAAAGTTGA TAGCGTCACT
AAAGGTTCGC CAGCCGCACA ATCTGGCTTA CAAAAAGATG ATGTGATTAT TGCCGTAAAC
CGCGAACGGG TTAAGGATAT TGCTGAGTTG CGTAAAGCCA TCGAAGCCAA ACCTGCCGTG
ATTGCACTGA ATATCGTGCG TGGTGAAGAT AATATTTACT TATTAATCCG CTAA
 
Protein sequence
MKKTSLLLSA LAISVGLGLA SVPMVSAAAL PAAVAGQTLP SLAPMLEKVL PAVVSVHVSG 
SQAQQQRLPE EFKFFFGPNA PSGKESSRPF EGLGSGVIIN AEKGYILTNN HVINNADKIR
VQLNDGREYD AKLLGRDEQT DIALLQLTDA KNLTAIKIAD SDNLRVGDFA VAVGNPFGLG
QTATSGIISA LGRSGLNLEG LENFIQTDAS INRGNSGGAL VNLDGELIGI NTAILAPGGG
NIGIGFAIPS NMAQNLSQQL IEFGEVKRGL LGIRGSEMTA DIAKAFNIDA QRGAFVSEVL
PKSAAAKAGI KPGDVLISVD GKKISSFAEL RAKVGTTGPG KTIKIGLLRE GKPLEVSVTL
DNSSSTSTSA ENLSPSLQGA SLSNGELKDG SKGIKVDSVT KGSPAAQSGL QKDDVIIAVN
RERVKDIAEL RKAIEAKPAV IALNIVRGED NIYLLIR