| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0397 |
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| Symbol | |
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| ID | 5386694 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 456601 |
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| End bp | 458517 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640863366 |
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| Product | regulatory protein CsrD |
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| Protein accession | YP_001399390 |
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| Protein GI | 153949170 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 0.793153 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGATTTA CCACCAAACT TTCTGCGTTT ATGACGCTGC TGGTCGTATT GGCTATGTGT
TTAGTCTTAT TGGGCAGCAC GATCAGCTTC TTCTATTTGT GCCAGAAGAA AATGGAACAA
CGGCTCCAAA GTATTGTGAC CGCTTACGAT CAGTCACTGC TGCTGCAACC CATCAATAAA
AAACGTGAAT GGCTGCCACT GATGATGCAG ACCCTTGGTG TGGTCGATGT CAGTGTCAAA
AATAGCACCA GTACCCTCTA TCAACTCCAC ATTCCTGCAG TTTATACGCC TTGGAACAGC
CACAGTCGTT ACCGTCAGAT GGTATTGCCT CTGTTGCATC AGCCAGGGGC GGAGATGCAT
TTCAACTATA TTGACCCGTT GGGCAGCTAT GCCCGTTCTA TTTATGCCGC GGCCATTTTA
TCGCTGGTGG TGGTGGTCAT TGCGTTAACG TTGTTGTTGA GTTTTCGCTG GCTACGTGAC
CAGACGGTGG GGCAGGAAAA ACTTGAACGG CGAGCAAGGC GCATTCTCAA TGGTGAACGT
GAGCATGCGG TGCGCAGCGA GGATTACGAA TGGCCACCTT GTGCCAGCAG GGCTATTGAC
CATTTATTAT CTGAGTTGAT GGAGGTGCGG GCAGAACGCA ATCGGGTAGA TACGTTAATC
CGCACGTTTG CGGCTCAAGA TGCTCAGACT GGCCTCAGTA ACCGTCAGTT TTTTGATAAC
CAACTGACCA CACAACTTGA AGAGACCGGC GCGCACGGCG TGGTCATGAT GGTGCAACTG
CCCGATTTTG AAGCCTTAAA TGAAACGCAT GATCAGCAGC AAGTACAGGA ATTGATGAGT
TCACTGGTTA ACCTGCTGTC AACTTTTGTG GCCCGCTACC CCTCAGCACT CTTGGCCCGC
TACCTTAATA GTGACATCGC GATATTACTG CCCCACAAAA CCCTGAAAGA TGCCGATGTG
ATGGCCGCAC AGTTGGTGAA TGCGGTGAGA ACCTTACCGG AGCCTCATAT TATTGATCGC
GAATCACTGT TGCATATTGG CATCGTGGCT TACCGGAGTG GTGAGTCAGT CGAACAAATT
ATGGACAATG CCGGGCAGGC GACCAAAAGT GCGGCGCTGT ATGGTGGCAA CGGTTGGTAT
GTGTTCGACA CTCAGGTACC AGAGCGCGGG CGTGGCAGTG TTAAATGGCG CACATTACTG
GAACAGACTC TGGCGAGCGG AGGCCCAAGG CTTTATCAAA AACCCGTTAT TACTGTTGAT
GGCAAAATAA GCCATCGTGA AATAATTAGC CGCATATATG ATGGTGAGCA GGAGCTACTG
GCGGCCGAGT TTATGCCCTT GGTACAATTG CTCGGATTGG GTGAACGTTA TGATCGGCAA
AAGATTGATA AGATAATTCC TTTATTATCT TTATGGCCGG ATGAAACGCT GGCATTTTCT
ATCAGCGTTG ATTCATTATT ACATCGTCCT TTCCAGCGCT GGTTGCGTGA CACGCTATTA
CAGTGCAAAA AATCTGACCG AATGCGAATT ATCTTTGAAC TTGCAGAGGC AGATGTGTGT
CAACATATCG AAGAAATCCG CCAAATGGTC CGTTTATTGC GTGGCGTAGG CTGCAAAGTG
ATGGCATCAC AGGCTGGATT GACGGTTGTC AGCACCTCAT ATATTAAGTC TTTGCAGGTT
GAAATGATAA AGCTTCATCC CGGTGTGGTA AGAAGCATTA ATTTTCGCTA TGAAAACCAG
TTATTTGTAG AAAGTCTGAC CGGTGCCTGT GCAGGGACGC AGACGAAAGT TTTTGCGGCA
GAAGTGCGTA CCCGTGAAGA ATGGCAAACG CTGCAAGAGA AAGGCGTTTA CGGCGGACAG
GGCAATTTCT TTGCTCCACC GACCCCATTA AACTCCGGAA AGAAAAAATA TTCGTAA
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| Protein sequence | MRFTTKLSAF MTLLVVLAMC LVLLGSTISF FYLCQKKMEQ RLQSIVTAYD QSLLLQPINK
KREWLPLMMQ TLGVVDVSVK NSTSTLYQLH IPAVYTPWNS HSRYRQMVLP LLHQPGAEMH
FNYIDPLGSY ARSIYAAAIL SLVVVVIALT LLLSFRWLRD QTVGQEKLER RARRILNGER
EHAVRSEDYE WPPCASRAID HLLSELMEVR AERNRVDTLI RTFAAQDAQT GLSNRQFFDN
QLTTQLEETG AHGVVMMVQL PDFEALNETH DQQQVQELMS SLVNLLSTFV ARYPSALLAR
YLNSDIAILL PHKTLKDADV MAAQLVNAVR TLPEPHIIDR ESLLHIGIVA YRSGESVEQI
MDNAGQATKS AALYGGNGWY VFDTQVPERG RGSVKWRTLL EQTLASGGPR LYQKPVITVD
GKISHREIIS RIYDGEQELL AAEFMPLVQL LGLGERYDRQ KIDKIIPLLS LWPDETLAFS
ISVDSLLHRP FQRWLRDTLL QCKKSDRMRI IFELAEADVC QHIEEIRQMV RLLRGVGCKV
MASQAGLTVV STSYIKSLQV EMIKLHPGVV RSINFRYENQ LFVESLTGAC AGTQTKVFAA
EVRTREEWQT LQEKGVYGGQ GNFFAPPTPL NSGKKKYS
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