| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0328 |
|---|
| Symbol | |
|---|
| ID | 5385920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 382948 |
|---|
| End bp | 385170 |
|---|
| Gene Length | 2223 bp |
|---|
| Protein Length | 740 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640863298 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_001399322 |
|---|
| Protein GI | 153950765 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGCTC ATGATAAAGC TAATAATAAT AAAGCCGCGG ACAAGACCGG CACGGTGACG
CCGACCCATA TCGTCTCGCC GGAGGCCGCC CCAACCGTGA GTGGCGCTCA GATGACCGAG
ATAGCCGGGG GGATCGGGGA TGCGGTGGGC GGCACTGCCG GTAAGCGCAT CAATCAGGCC
GCCGAGGTGG CTAAAACTGC CCTGGATGCC AAGGCAAAAG TCCTGGACGG CGGCGTCACG
CCGCTGAATC TGGCCGCGGG CGGGGCCGGT GCGGGATTAC CGGACAGCGC CGCGGCGGCG
CTTACCCGCC TGGTCAAACA GCCCTCCGGC CTGCAATTTA CCCTGACGGC GGCCAGTTTA
CCGCCCCAGA CCTTTGCGGT GGTGGATTTC ACCCTGAGCG AGATGCTCTC CTCGCCGTTT
GTGCTCAATG TCGGGCTGGC GAGTGCCGAT CCGGCGGTGG ATTTTGCGGC GGTATTGGAT
GAAGACGCCA CGCTGTTTAT CTGGCGCGAA GGGGTACTGC AACGCAGCAT CACCGGCATG
GTCGCCAGCT TTGAACAGGG CGATACCGGT TTTCATCAGA CCCGCTACAG CATGGTGATC
CGCCCGGCGC TGTGGCGCAC CAGCCTGCGG CGCAATGCCC GCATCTTCCA GCAAGCCTCG
GTGGAAGAGA TCATCACCAC CCTGCTGAAA GAGAACGGCA TCAACGATTT TGCTTTTGGT
TTTCGCCACC CGCACCCGGT GCGCGAGTTC TGCGTGCAAT ATCAGGAGTC CGATTTTGAT
TTTATCCAGC GCCTGACGGC AGAAGAGGGG ATTTTCTACT ACTTCGAGTT CAGCGCCGGG
AAAAATACCG TGGTGTATGC CGATGATGTT GGCTCCCTGC CGAAAGGCGC GTCACTGCCC
TATAACCCGA ATGTGGCGGC GCAGGCGCAG GAACTGAGTA TCACCACCTT CACCCGCAGT
GCGCAGGTGC GCCCGGCGAT GGTGCAACTG AAAGACTACA CCTTTAAAAA CCCGAACTGG
GCCGCGGCCT TCAGCGAACA GTCGGGAGAA CTGCAAAACC AGCGACCGGA CTACGAGCAT
TTTGATTTTC CGGGGCGCTT CAAAGATGCC CAGCACGGGC AGGATTTTAC CCGCTACCGG
CTGGACGCAC TGCGCAATGA CGCCAATCTG GGGCAGGGGG CGAGCAATGA TTTTACCCTC
CAGCCGGGGC AGTTGTTCAG CCTGTACAAC CACCCGCGTG GTGATCTGAA CCACGCCTGG
CAGTTGCTCG GCATTCAGCA CAGCGGCAAA CAGATGCAGG CGCTGGAGCA GGCGTCTGGC
GATCAGGGCA CGGTGCTGTT CAACCACTTC AGTTTTATTC CGCATACCCA GACCTGGCGG
CCGACGCCGT TGGCTAAACC GGCGATGGAC GGCCCGCAGA TCGCCATGGT GGTGGGGCCG
CCGGGGGAAG AGATTTACTG CGACGAATAC GGCCGTATCC GCCTGCAATT TTTATGGGAT
CGCTACGGGC AGAGCAATGA CAACAGCTCC TGCTGGATCC GGGTAACCCA GCCGTGGGCG
GGCCAGGGCT GGGGCATGCT GGCCATTCCG CGTATTGGTC AGGAAGTGGT GGTGGATTTT
CTGCATGGCG ATCCGGATCA ACCGATTGTC ACGGGGCGGA CCTATCACGC CAACAACATC
CCGCCGGGGT CGTTACCGGC CAGTAAAACC CAGATGGCGT TCCGCTCAAA AACCCACAAA
GGGGAAGGCT ACAACGAAAT GCGCTTCGAG GACGCCAAAG GCGGCGAAGG GCTGTTTATG
CATGCGCAGA AAGATATGAC GACCATGGTG CTGAATGATC GCAAAACCGA TGTGACTCAG
GACCATTCAG AGCACATTGG GCAAGACCAG TCCGTGACGG TTGTGCGTAA CCAAAGTAAT
ACGATCCAAA ATGATCGCCG GGTGGAGGTG ACTCGCGATC AACAAACCGA AGTGGGCAAT
GATTACCAGC TAGTGGTGAA AGGTGAAAAG AAAGAGTTTG TGACGAAAAT TCGTTACACC
GAAGTGCATG AAGACGAAAC GCTCACGGTG ACGAAAAGTA TTAAAATCCA TGCCAAACAA
GGTGATATCA GCATATCAAC CCCGAATGCC GGAATTACGA TCACCCATGA CGGTGCCATT
ATTCTGCAAG GGAAATACAT TCGTTTAGCG GCCGATATGA TCGATCTTAA TCCAGAGGAG
TAG
|
|---|
| Protein sequence | MFAHDKANNN KAADKTGTVT PTHIVSPEAA PTVSGAQMTE IAGGIGDAVG GTAGKRINQA
AEVAKTALDA KAKVLDGGVT PLNLAAGGAG AGLPDSAAAA LTRLVKQPSG LQFTLTAASL
PPQTFAVVDF TLSEMLSSPF VLNVGLASAD PAVDFAAVLD EDATLFIWRE GVLQRSITGM
VASFEQGDTG FHQTRYSMVI RPALWRTSLR RNARIFQQAS VEEIITTLLK ENGINDFAFG
FRHPHPVREF CVQYQESDFD FIQRLTAEEG IFYYFEFSAG KNTVVYADDV GSLPKGASLP
YNPNVAAQAQ ELSITTFTRS AQVRPAMVQL KDYTFKNPNW AAAFSEQSGE LQNQRPDYEH
FDFPGRFKDA QHGQDFTRYR LDALRNDANL GQGASNDFTL QPGQLFSLYN HPRGDLNHAW
QLLGIQHSGK QMQALEQASG DQGTVLFNHF SFIPHTQTWR PTPLAKPAMD GPQIAMVVGP
PGEEIYCDEY GRIRLQFLWD RYGQSNDNSS CWIRVTQPWA GQGWGMLAIP RIGQEVVVDF
LHGDPDQPIV TGRTYHANNI PPGSLPASKT QMAFRSKTHK GEGYNEMRFE DAKGGEGLFM
HAQKDMTTMV LNDRKTDVTQ DHSEHIGQDQ SVTVVRNQSN TIQNDRRVEV TRDQQTEVGN
DYQLVVKGEK KEFVTKIRYT EVHEDETLTV TKSIKIHAKQ GDISISTPNA GITITHDGAI
ILQGKYIRLA ADMIDLNPEE
|
|---|
| |