Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_0326 |
Symbol | |
ID | 5386280 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 377928 |
End bp | 381461 |
Gene Length | 3534 bp |
Protein Length | 1177 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640863296 |
Product | putative lipoprotein |
Protein accession | YP_001399320 |
Protein GI | 153947566 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTGC CGTTCTTTAT ACGCATAGCC AAGCCCGCCA TTCCTCGCCT TAAAGCGTCA ATACCGGTGG TATTGGCGTT GATGGCTTGT GCGGCACTCA TTTGGGTATG GATTTACGGA CCCGAGTGGC AATTGGGGGA AAATTACCCG TTTGAGACAT TATTGAGCCG TTGGTTGGTC ACGGCGGTAT TTGTCTTGGT GGCCGTTTGT TGGCTCAGCC TGAAAGTCAT GAGGCGAGTA CAACACCTGG AAAAACTCCA ACTGCAAACG AAAATTCAGC TCGACGACCC CGTCAGTGCT GATATCGAAC AACAAAACCA CTACCTCAAT GGCTGGAAGC ACCAACTTCA GCGCCATTTG AACACCCCGG AATATCTGTA TCACCTGCCC TGGTACATGG TCATTGGTGC GCGCAATAGC GGCAAAAGTA CACTGATCAA AGAAGGGTAT AAACTGACAG AGATCTCCGC ATCCGAGCGG CTCCATGTGG AAGGCGCAGC AGATCTGCGC GTCCGCTGCT GGTTGGGGGA ACAAGCGGTT ATTATCGATC CTGCGGGGGT GCTGATTGAA CAACCTACGA CACCGATCGC GGGCAAAGCA TCACTCAACA GCCGCTTATG GCAAAGTCTA TTATCCTGGC TGATTGAACA GCGCCAGCGT CAGCCGCTAA ACGGCATTAT TCTCACCGTC GATCTTCATC AGATGATGAC CGCGAATAAA GCGCAGCGGG AGACGTACGT CGCTGATATT CATCAACGGC TGCAAGAGAT ACGGCTGTCT TTGCACAGCC AGGTGCCGCT GTATGTGGTG TTCACCAAAA TGGACCTGCT GTACGGCTTC GAGGCCATGT ACCAATCGCT GGATAAAGCC GAACGTGAAG CGGTTCTGGG GGTGACGTTC AGCCTCAATG CGGCGGATCC GGACGTGTGG CGGACGGAGT TGAAACAGTT CTGGCAGCAA TGGGTCGCAC AACTGAATGG CGCGATGCCG GACATGATGC TGAACAGTGT GGATGCCGGG CAGCGTAGCC AGTTGTTTAG CTTCACTCGC CAGATGCAGG GCCTGCACGA TTACGTCGTG CAACTGCTGG AAGGCATTCT GTACCGTGGA GAACATGCCC AGCCGCTGTT ACGGGGGGTT TATCTCACGT CTGCCCAGCA ACGCGGGCAA ATGGACGATA TCTTTACCCA ATCTGCCGCG GTGCAATATC ACCTTGCGCC ACAGGCCTTC CCGACCTGGC CGGTCTCGGA TACGACGCCG TATTTTACCA AAGCGCTGTT TAATCAGGTG CTGTTGGCCG AACCCAATCT GGCCGGAGAG AACGGTATCT GGCTGCAAAA AACGAGAAAG CGAATGTTCA TTTTCTCGGG GGTGGGTGCC CTGGCCGCGC TGACCTTATG GGGCTACTGG CACTACTATC ACCAGCTTAA CTACCGGGCT GGCGAAGAGG TATTAACCCA GGCAAAAACC TTCTTATCGA TCCCACCGCC AGAAGGCGAT GACCGTTATG GCAATCTGCA ACTGCCGCTG CTAAACCCCA TCCGTGACGC CACGCTGGCT TACGGTAATT ACCATGAACG CAGCCCGTTC CTGGCGGATA TGGGGTTATA TCAGGGCAAT AATATCGGGC CTTATGTCGA AAGCACTTAC TTGCAACTCC TACAGCAACG TTTTGTCCCG GCACTGATGA GCGGGCTGTT GGAACAACTG AACGCCGCAC CGAAGGGCAG TGAAGAGAAA CTGGAAATTC TGCGGGTGAT GCGGATGTTG GAAGACGGCA GTGGCCGCAA TGCCGCGCTG GTTGAACAAT ATATGAGCCA CCGCTGGAGC CAACAATTCA ACGGCCAGCG CGAGTTGCAG GAGCAACTGT CGAGCCACCT GAACTACGCA CTGAAACACA CCGACTGGCA CGGCGCACGG GAAAGTGGCG ATCAATATGC GATCAAGAGC TTTGTCCCGT ACCTCAGCCC GATCCAGTCA GCGCAGCAAG AGTTGAGTAA ACTCTCGATC TACCAACGGG TGTATCAGAA CCTGCGGATC AAAGCACAGG ATGCGTTGCC GCCCGCGCTC GATTTGCGCG ATCAGATCGG CGCAAGTTTT GACGACATCT TTGTCTCCGG TAACGATCGC CTGCTGGTGA TCCCGCAATT CCTGACCCGT AGCGGCTTAC AGAGTTACTT CATCAAACAG AACGATCAAC TGGTTGATCT CACGGTGATG GACAGTTGGG TACTTAATCT CACCAAGAAC GTCGAATACA GCGAGGCAGA CCGCAAAGAG ATCCATCGCC AGGTGACCGA ACAGTATCTT GGCGATTATA CCGCCACCTG GCGTGCGGCC ATGAATAACC TATCGGTCAG TGATTTTGAA GGCTTGCCAC AGGCGATCAG CGCCATTGAA CAGGTGATCA GCGGGGAACA ACCTTTCCGC CGTGCACTGC AAACGCTGAG TGACAACACC CGCTTGCCGG TTATCTCGGA TCTGATCCCC GCGAAGGAGC AGCAAGAGCT GCTGCAAAAA CCCGATTACC TGCTGCTGAC CCGCATCAAC CGTGAGTTCT CCCCCGAAAC GGCGGTGCTG GTGGAGAATG GCGATAAAGG CAGCGTGATC CAAAGTGTTT ACCAAAAACT GACCGAGCTA CACCGCTATC TGTTGGCGAT CCAAAACTCG CCCGCGCCGG GCAAAGCGGC GTTGAAGGCG GTGCAATTAC GTCTGGATCA AAACAACAGT GATCCGATTT TCGAAGTCCA GCAACTGGCT AAAAACCTAC CGGAGCCGCT AAACCGCTGG GTGGGCGAAC TGGCAGAGCA AGCCTGGCGG GTGGTGATGA TGGAGGCGAT CCAGTCACTG GAAGTGGAGT GGAATGAGAC GGTGATCAAA CAGTATCAAA CCTACCTGGC CGGACGTTAT CCCTTCGATC CTCACGCGAA ACAGGATGTA CCACTCAGTG AGTTTGAACG CTTCTTCGGG CCGAAAGGCA CGCTCGATGC ATTCTATCAG CAGAACCTGA AACCGTTTGT CGAAAACAAC CTGACCGGTG GCAGCGATGG CGAATTGCTG ATCCGGCCTG ATGTGTTACA GCAACTGGCG CAGGCGCGGA AAATTCGCGA CACCTTCTTC TCGGCCCAAA ACGGCCTGGG CACACAGTTT GCGATTGAAC CGGTGCTGTT AAGTGGCAAC AAGCGCCGCA GCGTATTGAA TCTGGATGGG CAATTACTGG ATTACGCCCA TGGCCGCAGC GGCGTAGTGC ATCTGGTTTG GCCAAACTCG ATGCGTGCAG GAGTGGAAAG CAAACTGACG TTAGTCCCGG ATGAGAGCGG CAAATCACCG CGCACCCTCA GCTTCAGCGG TCCTTGGGCG CAGTTGCGGC TGATCAACGC CGGTGAACTG ACCAATGTGG GCACCAACTC CTTCGATGTC CGCTTCAAGG TTGATGGCGG CGAGATGACG TACCGCATCT TTGTTGATGA ATCCGACAAC CCATTCGCGG GCGGTTTGTT CAGTAAATTC AGTCTGCCAG ACACTTTGTA TTAA
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Protein sequence | MKLPFFIRIA KPAIPRLKAS IPVVLALMAC AALIWVWIYG PEWQLGENYP FETLLSRWLV TAVFVLVAVC WLSLKVMRRV QHLEKLQLQT KIQLDDPVSA DIEQQNHYLN GWKHQLQRHL NTPEYLYHLP WYMVIGARNS GKSTLIKEGY KLTEISASER LHVEGAADLR VRCWLGEQAV IIDPAGVLIE QPTTPIAGKA SLNSRLWQSL LSWLIEQRQR QPLNGIILTV DLHQMMTANK AQRETYVADI HQRLQEIRLS LHSQVPLYVV FTKMDLLYGF EAMYQSLDKA EREAVLGVTF SLNAADPDVW RTELKQFWQQ WVAQLNGAMP DMMLNSVDAG QRSQLFSFTR QMQGLHDYVV QLLEGILYRG EHAQPLLRGV YLTSAQQRGQ MDDIFTQSAA VQYHLAPQAF PTWPVSDTTP YFTKALFNQV LLAEPNLAGE NGIWLQKTRK RMFIFSGVGA LAALTLWGYW HYYHQLNYRA GEEVLTQAKT FLSIPPPEGD DRYGNLQLPL LNPIRDATLA YGNYHERSPF LADMGLYQGN NIGPYVESTY LQLLQQRFVP ALMSGLLEQL NAAPKGSEEK LEILRVMRML EDGSGRNAAL VEQYMSHRWS QQFNGQRELQ EQLSSHLNYA LKHTDWHGAR ESGDQYAIKS FVPYLSPIQS AQQELSKLSI YQRVYQNLRI KAQDALPPAL DLRDQIGASF DDIFVSGNDR LLVIPQFLTR SGLQSYFIKQ NDQLVDLTVM DSWVLNLTKN VEYSEADRKE IHRQVTEQYL GDYTATWRAA MNNLSVSDFE GLPQAISAIE QVISGEQPFR RALQTLSDNT RLPVISDLIP AKEQQELLQK PDYLLLTRIN REFSPETAVL VENGDKGSVI QSVYQKLTEL HRYLLAIQNS PAPGKAALKA VQLRLDQNNS DPIFEVQQLA KNLPEPLNRW VGELAEQAWR VVMMEAIQSL EVEWNETVIK QYQTYLAGRY PFDPHAKQDV PLSEFERFFG PKGTLDAFYQ QNLKPFVENN LTGGSDGELL IRPDVLQQLA QARKIRDTFF SAQNGLGTQF AIEPVLLSGN KRRSVLNLDG QLLDYAHGRS GVVHLVWPNS MRAGVESKLT LVPDESGKSP RTLSFSGPWA QLRLINAGEL TNVGTNSFDV RFKVDGGEMT YRIFVDESDN PFAGGLFSKF SLPDTLY
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