Gene YpsIP31758_0316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_0316 
Symbol 
ID5387339 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp365436 
End bp367256 
Gene Length1821 bp 
Protein Length606 aa 
Translation table11 
GC content49% 
IMG OID640863286 
Producthypothetical protein 
Protein accessionYP_001399310 
Protein GI153947194 
COG category[S] Function unknown 
COG ID[COG3519] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03359] type VI secretion protein, VC_A0110 family 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGTTCG AAAAGTATTT CAGGGACGAG CTGGACTACC TCCGGCAATT AGGACGCGAT 
GCCGCAATAG AACGGCCTCA TCTCGCTGCA TTTTTATCTG AGCAAGGTTC TGATCCGGAT
GTTGAACGTT TGCTGGAAGG CTTTGCTTTT CTAACGGGCA ACCTGCGTGA AAAAATCGAT
GATCAATTCC CTGAATTGAC TCATGGTTTA CTGAATATGT TGTGGCCGAA CTACTTACGG
CCAATACCGA GCATGACCAT CATCGAGTAC ACACCGGATG AAAGTGTGGT CACCGAGGCG
ACGCTGGTGA AACGGGGTAG CCAAGTGATG AGTATCCCCA TCGCACAAAA TGGTCAGCGC
AGCGCGTTTA TCAACAGTAA TGCTCATGCC GGGCCACAAT GTACTTTTAC GTTGTGCCGT
GATGTGTGGT TGTTCCCCAT GTCCATCCGG GAGATCTCGG CGAACAGCAG TAACGAACAA
GGCATTTTGA GTGTTCACTT TGCCGCCAAA GCGGAATTGA ACTTACAAGA CCTGCAACTG
GATAAATTGC GCTTTTATCT GGGCGAAGAC AACTACACCA GCACGCAACT CTATTTCTGG
ATTAACCACT ATTTCGAACG CGCTGAACTG GTTGTCAACG GGATAACCAT CCCGATGCCT
GATTTTGACT TTAACCCAGT GGGCTTTGAG CGCGATGATG CCCTCTTGCC GTACCCGAAA
AACGCCTATA TGGGTTACCG GATCCTGCAA GAGTATTTTT GCTTCCCTGA AGGCTTTTTG
TTCTTTGATG TCAATGGTGT GGTCGATTTT CCGCCGCACT TGAATGCCAG TGAATTCTCT
CTGAATTTGT ATTTCTCTCA GGCATTGCCG CCGGACGTGA AAGTCCGCTC CACCACACTG
CGGATGAATT GCACACCTGC GGTGAACCTG TTCCAACATG ACAGTGAAGC GATTGATCTT
GATGGAACCC AGACGGAATA CCCGCTCTGT GTCAGCTACC ATAATCCGGA TCACTACGAC
ATCTTTTCAG TTGATCGGGT TGACAGTTGG CTCAGTGAAA AAGGTGCTCC TAAGGGGCGC
GGCCGGGGGC ATGGCAGGGT GTACACCTCG TTTGAGAGCT TCCACCATCA GATCGAACAC
TCGCAAGAAA AGACCGCACT TTATTACCGC CTACGTGTGA AAAATTCATT ATTCCGTAAG
GGATTCGAAC ACTACATTTC CTTTGTTCGC AGTGATGAAT CGAAGCTGGT GCTTGCTGAA
GAGAATGTCT CGGTCAGCCT GACGTGCACC AACCGTGAGT TGCCGCTGTC GTTGCGCGTT
GGTGATATCA ATCAACTCAG CACAGACAGC CCTTCATTCG CGACGTTCCG CAATATTACC
CGTCCTTCCG TGCCGTTGTA TCCGGTGCTG GATGGGGGCC TGCATTGGTC ATTGCTCTCC
AATATGTCGT TGAACTACAT GTCCTTACTG GATAAGGACG CGTTGAAGCA AATTCTGCAT
ACCTATGATT TCCCAAGCCT GCATAACCGG CAATCTGCCA GGGCATCGCA AAAGAAACTG
GACGCTATCC AACGTATTGA AACACAACCG ATTGACCGGT TGTTTCGTGG CTTACCTGTC
AGAGGGCTAC AAACCACGCT ATGGCTGGAG CAAGGGGCCT TTAGCTCTGA AGGCGAGCTT
TATCTCTTCA GCACGGTATT AGCTCGCTTC TTCTCACTGT ATGCCAGCGT CAATGCGTTT
CATCTTTTAA AAGTCATCAA TCTTGATAAT CAGGAATGTT ACGAATGGCC GGTACAGACA
GGTCAACATG CACTGATGTA A
 
Protein sequence
MSFEKYFRDE LDYLRQLGRD AAIERPHLAA FLSEQGSDPD VERLLEGFAF LTGNLREKID 
DQFPELTHGL LNMLWPNYLR PIPSMTIIEY TPDESVVTEA TLVKRGSQVM SIPIAQNGQR
SAFINSNAHA GPQCTFTLCR DVWLFPMSIR EISANSSNEQ GILSVHFAAK AELNLQDLQL
DKLRFYLGED NYTSTQLYFW INHYFERAEL VVNGITIPMP DFDFNPVGFE RDDALLPYPK
NAYMGYRILQ EYFCFPEGFL FFDVNGVVDF PPHLNASEFS LNLYFSQALP PDVKVRSTTL
RMNCTPAVNL FQHDSEAIDL DGTQTEYPLC VSYHNPDHYD IFSVDRVDSW LSEKGAPKGR
GRGHGRVYTS FESFHHQIEH SQEKTALYYR LRVKNSLFRK GFEHYISFVR SDESKLVLAE
ENVSVSLTCT NRELPLSLRV GDINQLSTDS PSFATFRNIT RPSVPLYPVL DGGLHWSLLS
NMSLNYMSLL DKDALKQILH TYDFPSLHNR QSARASQKKL DAIQRIETQP IDRLFRGLPV
RGLQTTLWLE QGAFSSEGEL YLFSTVLARF FSLYASVNAF HLLKVINLDN QECYEWPVQT
GQHALM