Gene YpsIP31758_0039 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_0039 
SymbolspoT 
ID5387947 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp47379 
End bp49487 
Gene Length2109 bp 
Protein Length702 aa 
Translation table11 
GC content49% 
IMG OID640862999 
Productbifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 
Protein accessionYP_001399040 
Protein GI153950503 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTACCTGT TTGAAAGCCT GAATCTGCTG ATTCAACGTT ACCTGCCAGA GGAGCAGATT 
AAGCGCCTCA AACAGGCATA TCTTGTCGCA CGTGATGCTC ACGAGGGGCA GACACGCTCC
AGCGGTGAGC CTTATATCAC TCACCCGGTT GCTGTGGCCT GTATTCTCGC GGAGATGCGG
CTCGACTACG AAACCTTAAT GGCGGCGCTA TTACATGACG TCATTGAAGA TACACCTGCT
ACATATCAAG ATATGGAACA GCTGTTTGGG AAAAGCGTAG CCGAGTTAGT CGAGGGTGTA
TCTAAACTCG ATAAACTGAA CTTCCGTGAC AAGAAAGAAG CCCAGGCGGA AAACTTCCGC
AAAATGATCA TGGCAATGGT GCAAGACATC CGCGTCATTT TGATCAAACT GGCTGACCGT
ACACACAATA TGCGCACACT GGGCTCTTTG CGCCCGGATA AACGTCGGCG CATTGCTCGC
GAAACCCTTG AGATATACAG CCCACTCGCC CACCGGCTGG GTATTCATCA TTTAAAAACC
GAGCTGGAAG AGCTGGGTTT TGAAGCACTC TATCCCAATC GTTACCGCGT CATTAAAGAA
GTGGTAAAAG CCGCGCGCGG TAACCGCAAA GAGATGATTC AGAAGATCCT CGCGGAGATT
GAAGGGCGCT TGACCGAGGC TGGCATTCCT TGCCGGGTCA GTGGCCGTGA GAAGCATCTG
TATTCCATCT ACTGCAAGAT GCACCTGAAA GAACAGCGCT TCCATTCCAT CATGGATATC
TATGCTTTTC GGGTTATCGT CAAAGAAGTC GATACTTGCT ACCGCGTGTT GGGGCAGGCT
CATAGCCTGT ATAAACCCCG CCCTGGGCGC GTAAAAGACT ATATTGCTAT CCCTAAAGCC
AACGGCTACC AATCATTACA TACGTCATTA ATCGGTCCCC ATGGCGTACC GGTAGAAGTA
CAAATCCGTA CTGAAGATAT GGACCAGATG GCCGAAATGG GGGTTGCTGC ACACTGGGCT
TATAAAGAAC AAGGTGAGTC CGGTACCACG GCTCAAATCC GTGCTCAGCG GTGGATGCAA
AGCTTGCTGG AGTTACAACA AAGCGCGGGT AGCTCATTTG AATTTATTGA AAGCGTGAAA
TCTGATTTAT TCCCTGATGA GATCTACGTT TTCACCCCGG AAGGGCGCAT TGTGGAATTA
CCGGCTGGTG CCACACCGGT CGATTTTGCC TATGTTGTGC ATACCGATAT CGGCCATGCC
TGCGTAGGTG CCCGCGTTGA TCGTCAGCCG TACCCGCTCT CTCAGCCACT GAGTAGTGGC
CAGACGGTTG AGATTATTAC CGCTCCAGGA GCCAGACCAA ATGCTGCCTG GCTGAATTTT
GTCGTCAGTT CAAAAGCGCG AGCCAAAATA CGTCAATTAC TGAAAAATCT TAAACGTGAT
GAATCGGTCA GCCTTGGTCG CCGGTTACTG AATCATGCAT TAGGAAATGG GCGTAAACTC
TCTGATATTT CTGAAGAAAA TATCAAACAC GAGTTGGATA GAATGAAACT GGCTACGGTA
GATGACTTGC TGGCAGAAAT TGGTTTAGGT AATGCCATGA GCGTAGTGGT GGCTAAAAAC
CTATTGGGCG ATCCATCAAC ACTGGGCACC TCTGCTTCTG GTACCCGCAA GTTACCGATC
AAAGGTGCCG ATGGCGTACT TATCACGTTT GCCAAGTGCT GCCGTCCAAT CCCTGGTGAC
CCTATTATCG CTCATATCAG CCCAGGTAAA GGGTTGGTTA TTCATCACGA ATCTTGTCGG
AATATCCGTG GTTACCAGAA AGAGCCTGAG AAATTTATGG CTGTAGAATG GGACCAAGAG
ACTGAACAAG AGTTTATTGC CGAAATTAAA GTCGATATGT TTAACCAACA AGGTGCGCTT
GCCAATCTGA CCGCCGCGAT TAACGCCGCC GAATCCAATA TTCAGAGTTT GAATACAGAA
GAAAAAGATG GCCGGGTATA CAGCGCCTTT ATTCGCCTGA CCACTCGGAA CCGGGTCCAT
CTGGCTAACA TTATGCGTAA AATCCGTATC ATGCCAGATG TGGTTAAAGT TAGCCGTAAT
CGCAATTAA
 
Protein sequence
MYLFESLNLL IQRYLPEEQI KRLKQAYLVA RDAHEGQTRS SGEPYITHPV AVACILAEMR 
LDYETLMAAL LHDVIEDTPA TYQDMEQLFG KSVAELVEGV SKLDKLNFRD KKEAQAENFR
KMIMAMVQDI RVILIKLADR THNMRTLGSL RPDKRRRIAR ETLEIYSPLA HRLGIHHLKT
ELEELGFEAL YPNRYRVIKE VVKAARGNRK EMIQKILAEI EGRLTEAGIP CRVSGREKHL
YSIYCKMHLK EQRFHSIMDI YAFRVIVKEV DTCYRVLGQA HSLYKPRPGR VKDYIAIPKA
NGYQSLHTSL IGPHGVPVEV QIRTEDMDQM AEMGVAAHWA YKEQGESGTT AQIRAQRWMQ
SLLELQQSAG SSFEFIESVK SDLFPDEIYV FTPEGRIVEL PAGATPVDFA YVVHTDIGHA
CVGARVDRQP YPLSQPLSSG QTVEIITAPG ARPNAAWLNF VVSSKARAKI RQLLKNLKRD
ESVSLGRRLL NHALGNGRKL SDISEENIKH ELDRMKLATV DDLLAEIGLG NAMSVVVAKN
LLGDPSTLGT SASGTRKLPI KGADGVLITF AKCCRPIPGD PIIAHISPGK GLVIHHESCR
NIRGYQKEPE KFMAVEWDQE TEQEFIAEIK VDMFNQQGAL ANLTAAINAA ESNIQSLNTE
EKDGRVYSAF IRLTTRNRVH LANIMRKIRI MPDVVKVSRN RN