Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_0039 |
Symbol | spoT |
ID | 5387947 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 47379 |
End bp | 49487 |
Gene Length | 2109 bp |
Protein Length | 702 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640862999 |
Product | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase |
Protein accession | YP_001399040 |
Protein GI | 153950503 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTACCTGT TTGAAAGCCT GAATCTGCTG ATTCAACGTT ACCTGCCAGA GGAGCAGATT AAGCGCCTCA AACAGGCATA TCTTGTCGCA CGTGATGCTC ACGAGGGGCA GACACGCTCC AGCGGTGAGC CTTATATCAC TCACCCGGTT GCTGTGGCCT GTATTCTCGC GGAGATGCGG CTCGACTACG AAACCTTAAT GGCGGCGCTA TTACATGACG TCATTGAAGA TACACCTGCT ACATATCAAG ATATGGAACA GCTGTTTGGG AAAAGCGTAG CCGAGTTAGT CGAGGGTGTA TCTAAACTCG ATAAACTGAA CTTCCGTGAC AAGAAAGAAG CCCAGGCGGA AAACTTCCGC AAAATGATCA TGGCAATGGT GCAAGACATC CGCGTCATTT TGATCAAACT GGCTGACCGT ACACACAATA TGCGCACACT GGGCTCTTTG CGCCCGGATA AACGTCGGCG CATTGCTCGC GAAACCCTTG AGATATACAG CCCACTCGCC CACCGGCTGG GTATTCATCA TTTAAAAACC GAGCTGGAAG AGCTGGGTTT TGAAGCACTC TATCCCAATC GTTACCGCGT CATTAAAGAA GTGGTAAAAG CCGCGCGCGG TAACCGCAAA GAGATGATTC AGAAGATCCT CGCGGAGATT GAAGGGCGCT TGACCGAGGC TGGCATTCCT TGCCGGGTCA GTGGCCGTGA GAAGCATCTG TATTCCATCT ACTGCAAGAT GCACCTGAAA GAACAGCGCT TCCATTCCAT CATGGATATC TATGCTTTTC GGGTTATCGT CAAAGAAGTC GATACTTGCT ACCGCGTGTT GGGGCAGGCT CATAGCCTGT ATAAACCCCG CCCTGGGCGC GTAAAAGACT ATATTGCTAT CCCTAAAGCC AACGGCTACC AATCATTACA TACGTCATTA ATCGGTCCCC ATGGCGTACC GGTAGAAGTA CAAATCCGTA CTGAAGATAT GGACCAGATG GCCGAAATGG GGGTTGCTGC ACACTGGGCT TATAAAGAAC AAGGTGAGTC CGGTACCACG GCTCAAATCC GTGCTCAGCG GTGGATGCAA AGCTTGCTGG AGTTACAACA AAGCGCGGGT AGCTCATTTG AATTTATTGA AAGCGTGAAA TCTGATTTAT TCCCTGATGA GATCTACGTT TTCACCCCGG AAGGGCGCAT TGTGGAATTA CCGGCTGGTG CCACACCGGT CGATTTTGCC TATGTTGTGC ATACCGATAT CGGCCATGCC TGCGTAGGTG CCCGCGTTGA TCGTCAGCCG TACCCGCTCT CTCAGCCACT GAGTAGTGGC CAGACGGTTG AGATTATTAC CGCTCCAGGA GCCAGACCAA ATGCTGCCTG GCTGAATTTT GTCGTCAGTT CAAAAGCGCG AGCCAAAATA CGTCAATTAC TGAAAAATCT TAAACGTGAT GAATCGGTCA GCCTTGGTCG CCGGTTACTG AATCATGCAT TAGGAAATGG GCGTAAACTC TCTGATATTT CTGAAGAAAA TATCAAACAC GAGTTGGATA GAATGAAACT GGCTACGGTA GATGACTTGC TGGCAGAAAT TGGTTTAGGT AATGCCATGA GCGTAGTGGT GGCTAAAAAC CTATTGGGCG ATCCATCAAC ACTGGGCACC TCTGCTTCTG GTACCCGCAA GTTACCGATC AAAGGTGCCG ATGGCGTACT TATCACGTTT GCCAAGTGCT GCCGTCCAAT CCCTGGTGAC CCTATTATCG CTCATATCAG CCCAGGTAAA GGGTTGGTTA TTCATCACGA ATCTTGTCGG AATATCCGTG GTTACCAGAA AGAGCCTGAG AAATTTATGG CTGTAGAATG GGACCAAGAG ACTGAACAAG AGTTTATTGC CGAAATTAAA GTCGATATGT TTAACCAACA AGGTGCGCTT GCCAATCTGA CCGCCGCGAT TAACGCCGCC GAATCCAATA TTCAGAGTTT GAATACAGAA GAAAAAGATG GCCGGGTATA CAGCGCCTTT ATTCGCCTGA CCACTCGGAA CCGGGTCCAT CTGGCTAACA TTATGCGTAA AATCCGTATC ATGCCAGATG TGGTTAAAGT TAGCCGTAAT CGCAATTAA
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Protein sequence | MYLFESLNLL IQRYLPEEQI KRLKQAYLVA RDAHEGQTRS SGEPYITHPV AVACILAEMR LDYETLMAAL LHDVIEDTPA TYQDMEQLFG KSVAELVEGV SKLDKLNFRD KKEAQAENFR KMIMAMVQDI RVILIKLADR THNMRTLGSL RPDKRRRIAR ETLEIYSPLA HRLGIHHLKT ELEELGFEAL YPNRYRVIKE VVKAARGNRK EMIQKILAEI EGRLTEAGIP CRVSGREKHL YSIYCKMHLK EQRFHSIMDI YAFRVIVKEV DTCYRVLGQA HSLYKPRPGR VKDYIAIPKA NGYQSLHTSL IGPHGVPVEV QIRTEDMDQM AEMGVAAHWA YKEQGESGTT AQIRAQRWMQ SLLELQQSAG SSFEFIESVK SDLFPDEIYV FTPEGRIVEL PAGATPVDFA YVVHTDIGHA CVGARVDRQP YPLSQPLSSG QTVEIITAPG ARPNAAWLNF VVSSKARAKI RQLLKNLKRD ESVSLGRRLL NHALGNGRKL SDISEENIKH ELDRMKLATV DDLLAEIGLG NAMSVVVAKN LLGDPSTLGT SASGTRKLPI KGADGVLITF AKCCRPIPGD PIIAHISPGK GLVIHHESCR NIRGYQKEPE KFMAVEWDQE TEQEFIAEIK VDMFNQQGAL ANLTAAINAA ESNIQSLNTE EKDGRVYSAF IRLTTRNRVH LANIMRKIRI MPDVVKVSRN RN
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