| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | JJD26997_2058 |
|---|
| Symbol | topA |
|---|
| ID | 5389573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter jejuni subsp. doylei 269.97 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009707 |
|---|
| Strand | - |
|---|
| Start bp | 1808033 |
|---|
| End bp | 1810135 |
|---|
| Gene Length | 2103 bp |
|---|
| Protein Length | 700 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 640862912 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_001398963 |
|---|
| Protein GI | 153951428 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 47 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA ATTTAATCAT AGTAGAATCT CCTGCAAAAG CTAAAACCAT AGGAAATTTT
TTGGGAAAAG ATTATGAAGT GATTGCTTCT AAAGGACATA TTAGAGATTT ACCTAAATCA
AGCTTTGGGA TTAAAATAGA AGATGATGAA TTTATTCCAG AGTATAGAAT CACAAGCGAT
CATAGCGCCT TAGTTAAAGA ACTTAAAAGC AAGGCTAAAG ATGCCAAAGA AGTCTATCTT
GCAACCGATG AGGATAGAGA AGGAGAAGCT ATAGCCTATC ATATTGCAAA AGCTATAGGA
AAAGATGAAA ATACCTTGCC GCGCATTGTT TTTCACGAAA TTACCAAAAG CGCTATAGAA
AGTGCTTTAA AAAATCCAAG AAAATTAGAC ATGCATTCTG TCAATGCTCA ACAAACTAGA
CGCCTTTTAG ATCGTATCGT GGGGTATAAG CTCAGCCCCT TATTAGGGCA AAAAATTCAA
AGAGGGCTTA GTGCGGGGCG TGTTCAAAGT GCGGCTTTAA AGATCATAGT CGATCGTGAA
AAAGAAATTC GTGCCTTTGT ACCCCTAGAA TACTTTAGTA TAGATATGAT TTTTCAAAAA
GATTTAGATG CCGAACTAGT TGAGTTTGAC AAAGCTAAGA TAGAAAAACT TACCATTACC
AACAAAGATC GTGCCAAACT TATACTAGAG GCTTGTAAAA ATGAAGCTTA TAATATAAAT
GATATTGAAA GTAAAGAAAG AAAAATCGCT CCACCGCCTC CTTTTATGAC TTCAACTTTG
CAACAAAGTG CCAGCAATCG CCTTGGTTTT AACCCTAAAA AAACCATGAT GATAGCCCAA
AAACTCTATG AAGGAGTAAA TACTCACGAG GGTGTGATGG GGGTTATTAC TTATATGAGA
ACTGATAGTT TAAATTTAGC CAAAGAAGCT ATAGAAAATG CAAGAAAATT CATACAAGCA
AATTTTGGCA AAGACTATCT TCCAAGCAAA GCAAATGTAT ATACTACAAA GGCCAAAGGC
GCTCAAGAGG CCCATGAAGC TATACGCCCT ACAAATTTAA GTTTTACTCC AGAAATTGCG
ACCAAATTTT TAGACAAAGA TGAGTTAAAA CTTTACACAC TTATTTACAA TCGCTTTTTA
GCTTGTCAGA TAAATCCCGC TATCTCTCAA ACTCAAAATG TGTTTGTAAA AAATGATAGA
GCAGTTTTTA AAATAAGCGG TAGAAAAATC CTTTTTGATG GATATTATAA AGTTTATGGC
GATATGGATA AGGATAAAAT TTTACCCAAT CTTAAAATAG GTCAAAATTT AAAAGTGCAA
AATTTAGAAA TGAACTCACA TTTTACCGAA CCACCTTCAA GGTATTCAGA AGCTGGACTT
GTAAAAAAAC TTGAAAGTTT AGGCATAGGT CGCCCTTCTA CCTATGCGCC AACTATTTCT
ATACTTACAA GCCGTGATTA TGTAAAAATA GACAAAAAAC AACTCATTCC TAGCGAAGTT
GCTTTTAATG TAATCGAAGT GCTTGAAAAA AATTTCAGCG ATATAGTGGA TAGCAAATTT
ACTTCAAACC TTGAAAATAC TCTAGATGAA ATCGCAGAAG ATAAAGCAGA TTGGCAAGAA
ACTTTAAAAG AATTTTACTA TCCTTTTATG AGAAAAATCG AAGAAGGAAA AACAAAAATC
GCCAGTCAAA AAACTGTCAC AAAACTAGGA GAAAGTTGTC CTGATTGTGG CGGGGAACTT
GCTATTAGAA AAGGGCGTTT TGGAGAATTT GTAGCGTGTT TAAATTTTCC AAAATGTAAG
TATTCAAGAA ATTTAAAAAA TGAAAGCAAA AACGAAAGCG AAAATACTGC CGCAAAAACC
CAAACAAATG GCACAGGTAT TACTTGTCCA AGTTGTCAAA AAGGTGAAAT CGTAGAGCGC
TTTTCAAAAC GCGGTAAATT TTATGGTTGT AGCGTTTATC CAAAATGCAA TTTTATAAGC
AAGTACAAAC CAAGTGAAGA AAAATGCGAA GAGTGTGGCG AAACTTTAGT GATAAAAGAG
CTTAAAAAAG GCACATTCTT AGAATGTTTA AAATGTAAAA TTAAAAAAGA AATGAAGGAT
TAA
|
|---|
| Protein sequence | MKKNLIIVES PAKAKTIGNF LGKDYEVIAS KGHIRDLPKS SFGIKIEDDE FIPEYRITSD
HSALVKELKS KAKDAKEVYL ATDEDREGEA IAYHIAKAIG KDENTLPRIV FHEITKSAIE
SALKNPRKLD MHSVNAQQTR RLLDRIVGYK LSPLLGQKIQ RGLSAGRVQS AALKIIVDRE
KEIRAFVPLE YFSIDMIFQK DLDAELVEFD KAKIEKLTIT NKDRAKLILE ACKNEAYNIN
DIESKERKIA PPPPFMTSTL QQSASNRLGF NPKKTMMIAQ KLYEGVNTHE GVMGVITYMR
TDSLNLAKEA IENARKFIQA NFGKDYLPSK ANVYTTKAKG AQEAHEAIRP TNLSFTPEIA
TKFLDKDELK LYTLIYNRFL ACQINPAISQ TQNVFVKNDR AVFKISGRKI LFDGYYKVYG
DMDKDKILPN LKIGQNLKVQ NLEMNSHFTE PPSRYSEAGL VKKLESLGIG RPSTYAPTIS
ILTSRDYVKI DKKQLIPSEV AFNVIEVLEK NFSDIVDSKF TSNLENTLDE IAEDKADWQE
TLKEFYYPFM RKIEEGKTKI ASQKTVTKLG ESCPDCGGEL AIRKGRFGEF VACLNFPKCK
YSRNLKNESK NESENTAAKT QTNGTGITCP SCQKGEIVER FSKRGKFYGC SVYPKCNFIS
KYKPSEEKCE ECGETLVIKE LKKGTFLECL KCKIKKEMKD
|
|---|
| |